Variant report

Variant	rs3087337
Chromosome Location	chr13:96361404-96361405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96357533..96360111-chr13:96360254..96362838,2	K562	blood:
2	chr13:96356335..96359312-chr13:96360276..96362407,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16951267	1.00[CEU][hapmap]
rs3099361	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs4526889	1.00[CEU][hapmap]
rs7139515	1.00[CEU][hapmap]
rs7319610	1.00[CEU][hapmap]
rs7991191	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs9584313	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3087337	RASIP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96331400-96362200	Weak transcription	HSMM	muscle
2	chr13:96337600-96362200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:96337600-96364200	Weak transcription	Ovary	ovary
4	chr13:96345200-96362200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr13:96347000-96377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr13:96349200-96362200	Weak transcription	Fetal Intestine Large	intestine
7	chr13:96349600-96362200	Weak transcription	Dnd41	blood
8	chr13:96349800-96363000	Weak transcription	Fetal Lung	lung
9	chr13:96350800-96363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:96350800-96365400	Weak transcription	HSMMtube	muscle
11	chr13:96351000-96362200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:96351000-96362400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:96351000-96362600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:96351000-96362600	Weak transcription	Adipose Nuclei	Adipose
15	chr13:96351000-96363600	Weak transcription	Colonic Mucosa	Colon
16	chr13:96351000-96365800	Weak transcription	Brain Anterior Caudate	brain
17	chr13:96351000-96365800	Weak transcription	Fetal Brain Male	brain
18	chr13:96351000-96368600	Weak transcription	Lung	lung
19	chr13:96354200-96364600	Weak transcription	Brain Angular Gyrus	brain
20	chr13:96355000-96362200	Weak transcription	Fetal Muscle Leg	muscle
21	chr13:96355000-96364800	Weak transcription	Esophagus	oesophagus
22	chr13:96355600-96364000	Weak transcription	HepG2	liver
23	chr13:96355800-96362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:96355800-96364000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr13:96356000-96365200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr13:96356000-96372400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr13:96356200-96363200	Weak transcription	HMEC	breast
28	chr13:96356400-96362000	Weak transcription	Fetal Intestine Small	intestine
29	chr13:96356400-96363800	Weak transcription	Fetal Kidney	kidney
30	chr13:96356600-96362200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr13:96356600-96363000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr13:96356600-96393600	Weak transcription	Right Ventricle	heart
33	chr13:96356800-96362200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr13:96356800-96366000	Weak transcription	Hela-S3	cervix
35	chr13:96357800-96362200	Weak transcription	NHEK	skin
36	chr13:96357800-96362200	Weak transcription	Osteobl	bone
37	chr13:96358000-96362200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr13:96358400-96361800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr13:96358600-96363400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr13:96358800-96362600	Weak transcription	Fetal Stomach	stomach
41	chr13:96358800-96365600	Weak transcription	Brain Hippocampus Middle	brain
42	chr13:96359000-96364200	Weak transcription	Psoas Muscle	Psoas
43	chr13:96359400-96361600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr13:96359400-96363200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:96359400-96386200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr13:96359600-96362200	Weak transcription	Fetal Thymus	thymus
47	chr13:96359800-96362200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr13:96359800-96362200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:96359800-96368000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr13:96359800-96379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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