The 2.0 version of rSNPBase

Variant report

Variant rs3087894
Chromosome Location chr1:85787118-85787119
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85774600-85794800 Weak transcription Spleen Spleen
2 chr1:85774800-85790400 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr1:85774800-85790600 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:85778200-85790400 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:85778800-85788800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:85778800-85789600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:85779600-85787400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:85780000-85791800 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:85780000-85795800 Weak transcription Rectal Smooth Muscle rectum
11 chr1:85780200-85790400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:85780200-85795800 Weak transcription Stomach Smooth Muscle stomach
13 chr1:85780400-85788200 Weak transcription Fetal Muscle Trunk muscle
14 chr1:85780400-85791600 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr1:85780400-85793200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr1:85780400-85795800 Weak transcription Gastric stomach
17 chr1:85780800-85787600 Weak transcription Fetal Muscle Leg muscle
18 chr1:85781800-85792800 Weak transcription Pancreas Pancrea
19 chr1:85782200-85790600 Genic enhancers Muscle Satellite Cultured Cells --
20 chr1:85782400-85795000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:85782800-85794600 Weak transcription Skeletal Muscle Female skeletal muscle
22 chr1:85783000-85795800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:85783200-85795800 Weak transcription Aorta Aorta
24 chr1:85783800-85789800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr1:85783800-85791000 Genic enhancers Osteobl bone
26 chr1:85784000-85789600 Strong transcription HepG2 liver
27 chr1:85784000-85790400 Weak transcription Left Ventricle heart
28 chr1:85784000-85794600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:85784600-85794600 Weak transcription Fetal Lung lung
30 chr1:85784800-85787200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:85784800-85789400 Genic enhancers HSMM muscle
32 chr1:85785200-85788600 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:85785200-85789400 Strong transcription Liver Liver
34 chr1:85785600-85787400 Enhancers Placenta Amnion Placenta Amnion
35 chr1:85785600-85787400 Enhancers Hela-S3 cervix
36 chr1:85785600-85787600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:85785600-85787800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:85785600-85788800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:85785600-85788800 Enhancers HMEC breast
40 chr1:85785800-85787800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:85785800-85789400 Genic enhancers NHDF-Ad bronchial
42 chr1:85785800-85789600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr1:85785800-85789800 Strong transcription Fetal Intestine Large intestine
44 chr1:85786200-85787200 Enhancers HSMMtube muscle
45 chr1:85786200-85789400 Strong transcription Cortex derived primary cultured neurospheres brain
46 chr1:85786200-85790400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:85786400-85787200 Enhancers Breast Myoepithelial Primary Cells Breast
48 chr1:85786400-85787200 Weak transcription Duodenum Mucosa Duodenum
49 chr1:85786400-85787200 Enhancers Lung lung
50 chr1:85786400-85787400 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015