Variant report
Variant | rs3091244 |
---|---|
Chromosome Location | chr1:159684665-159684666 |
allele | A/C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10437340 | 0.82[ASN][1000 genomes] |
rs11265266 | 0.82[ASN][1000 genomes] |
rs1130864 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12083620 | 0.82[ASN][1000 genomes] |
rs12727021 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12728402 | 0.82[ASN][1000 genomes] |
rs12728740 | 0.82[ASN][1000 genomes] |
rs12730243 | 0.82[ASN][1000 genomes] |
rs12741825 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12754745 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12755606 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12759988 | 0.97[ASN][1000 genomes] |
rs1417938 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116635 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116636 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116651 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116653 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116655 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3116656 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4261114 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6672775 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005195 | chr1:159452759-159910337 | Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
C-reactive protein | 18439548 | GWAS catalog |