Variant report

Variant	rs3091310
Chromosome Location	chr3:46303697-46303698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr3:46303641-46303988	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
CCR3	TF binding region

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs10510750	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11574442	1.00[AFR][1000 genomes]
rs11575062	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11919884	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919943	0.87[CEU][hapmap]
rs11926063	1.00[CEU][hapmap]
rs13065351	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13067058	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13068145	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13068271	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13070099	1.00[CEU][hapmap]
rs13071469	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13073976	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13075270	1.00[CEU][hapmap]
rs13075836	1.00[CEU][hapmap]
rs13077302	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13078564	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13080757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088766	1.00[CEU][hapmap]
rs13092160	1.00[CEU][hapmap]
rs13093063	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13095946	1.00[CEU][hapmap]
rs13096307	1.00[CEU][hapmap]
rs13096325	1.00[CEU][hapmap]
rs13096371	1.00[CEU][hapmap]
rs13096808	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13096905	0.91[AMR][1000 genomes]
rs13097340	1.00[CEU][hapmap]
rs13100243	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1542755	1.00[CEU][hapmap]
rs17217831	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17283712	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17284138	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17284187	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17285143	1.00[AFR][1000 genomes]
rs17715106	1.00[AFR][1000 genomes]
rs17765882	1.00[AFR][1000 genomes]
rs17782551	1.00[AFR][1000 genomes]
rs1894387	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1894388	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2157053	1.00[AFR][1000 genomes]
rs2157055	1.00[AFR][1000 genomes]
rs2373156	1.00[CEU][hapmap]
rs2373245	1.00[AFR][1000 genomes]
rs2373250	1.00[AFR][1000 genomes]
rs2373251	1.00[AFR][1000 genomes]
rs2856762	0.87[CEU][hapmap];1.00[AFR][1000 genomes]
rs28677778	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3091314	1.00[CEU][hapmap]
rs3092957	0.88[EUR][1000 genomes]
rs3092958	0.88[EUR][1000 genomes]
rs3092959	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3136667	1.00[CEU][hapmap]
rs3176825	1.00[CEU][hapmap]
rs3176826	1.00[CEU][hapmap]
rs3181038	1.00[AFR][1000 genomes]
rs3181076	1.00[CEU][hapmap]
rs3181080	1.00[CEU][hapmap]
rs3204850	1.00[AFR][1000 genomes]
rs33998492	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34024447	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34041956	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34073838	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34079287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34106161	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34180919	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34190223	1.00[AFR][1000 genomes]
rs34265215	1.00[AFR][1000 genomes]
rs34272024	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34351442	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34363105	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34406035	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34448949	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34455547	1.00[AFR][1000 genomes]
rs34473395	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34578126	0.90[EUR][1000 genomes]
rs34692251	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34709208	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34883716	1.00[AFR][1000 genomes]
rs34988015	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34997818	1.00[AFR][1000 genomes]
rs35035328	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35117954	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35148665	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35203745	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35218998	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35260614	1.00[AFR][1000 genomes]
rs35367413	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35373513	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35413141	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35438577	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35511592	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35513549	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35516519	1.00[AFR][1000 genomes]
rs35568430	1.00[AFR][1000 genomes]
rs35577626	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35601704	0.88[EUR][1000 genomes]
rs35646896	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35821444	1.00[AFR][1000 genomes]
rs35943069	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs36030692	1.00[AFR][1000 genomes]
rs36048333	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36052732	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs36078103	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3749461	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3918354	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3918362	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3918365	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3918368	0.88[EUR][1000 genomes]
rs4473594	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4987053	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775046	1.00[CEU][hapmap]
rs6793370	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71327047	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71327048	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71327052	0.85[EUR][1000 genomes]
rs71327053	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71327054	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71327055	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71327056	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71327057	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71327063	1.00[AFR][1000 genomes]
rs71615445	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71622511	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620586	1.00[CEU][hapmap]
rs7624155	1.00[CEU][hapmap]
rs7628489	1.00[CEU][hapmap]
rs7631551	1.00[CEU][hapmap]
rs7649905	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7651539	1.00[CEU][hapmap]
rs9714000	1.00[AFR][1000 genomes]
rs9810242	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9832730	1.00[CEU][hapmap]
rs9838191	1.00[CEU][hapmap]
rs9872023	0.93[EUR][1000 genomes]
rs9882616	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46303400-46303800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:46303400-46304000	Enhancers	Dnd41	blood
3	chr3:46303400-46304600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:46303400-46304600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:46303400-46315200	Weak transcription	Gastric	stomach
6	chr3:46303600-46303800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:46303600-46303800	Flanking Active TSS	GM12878-XiMat	blood
8	chr3:46303600-46304000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:46303600-46304000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:46303600-46304000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:46303600-46304000	Weak transcription	Lung	lung
12	chr3:46303600-46304200	Active TSS	Primary T regulatory cells fromperipheralblood	blood

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