Variant report

Variant	rs3092956
Chromosome Location	chr3:46404221-46404222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1800944	1.00[AMR][1000 genomes]
rs34477815	0.85[AFR][1000 genomes]
rs3918381	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635373	0.83[AFR][1000 genomes]
rs7636001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46396000-46422000	Weak transcription	Lung	lung
2	chr3:46400400-46404400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:46401000-46404400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:46401000-46404600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:46402200-46404400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:46402200-46404400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:46402400-46405400	Enhancers	GM12878-XiMat	blood
8	chr3:46402600-46404400	Enhancers	Spleen	Spleen
9	chr3:46402800-46404400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:46403000-46404400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:46403000-46404400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr3:46403000-46408000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:46403600-46407000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:46403800-46409600	Weak transcription	Fetal Intestine Large	intestine
15	chr3:46404000-46404400	Enhancers	Thymus	Thymus
16	chr3:46404000-46404600	Enhancers	Small Intestine	intestine
17	chr3:46404000-46404600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:46404000-46407400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:46404000-46409400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:46404000-46409400	Weak transcription	Fetal Thymus	thymus
21	chr3:46404200-46404400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:46404200-46404400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:46404200-46404400	Enhancers	Right Atrium	heart
24	chr3:46404200-46407000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr3:46404200-46407000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:46404200-46407000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:46404200-46409400	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links