Variant report

Variant	rs3095158
Chromosome Location	chr13:51019282-51019283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11842790	0.87[ASN][1000 genomes]
rs12853498	0.87[ASN][1000 genomes]
rs12855386	0.87[ASN][1000 genomes]
rs12858133	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12866532	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867018	0.87[ASN][1000 genomes]
rs12871645	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12871937	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12874278	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12874827	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12876227	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs149872	0.83[CEU][hapmap]
rs17074093	0.87[ASN][1000 genomes]
rs17074141	0.87[ASN][1000 genomes]
rs17074143	0.87[ASN][1000 genomes]
rs17074145	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17363026	0.87[ASN][1000 genomes]
rs17363566	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs182187	0.93[EUR][1000 genomes]
rs201765	0.81[CEU][hapmap]
rs2066664	0.87[ASN][1000 genomes]
rs2066673	0.87[ASN][1000 genomes]
rs2066679	0.87[ASN][1000 genomes]
rs3095164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095165	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3116594	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3116595	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34042295	0.87[ASN][1000 genomes]
rs34357487	0.87[ASN][1000 genomes]
rs34374535	0.87[ASN][1000 genomes]
rs34453016	0.87[ASN][1000 genomes]
rs34556868	0.87[ASN][1000 genomes]
rs34700115	0.87[ASN][1000 genomes]
rs34712361	0.87[ASN][1000 genomes]
rs34972893	0.87[ASN][1000 genomes]
rs35299189	0.87[ASN][1000 genomes]
rs35383320	0.87[ASN][1000 genomes]
rs35413012	0.87[ASN][1000 genomes]
rs35542898	0.87[ASN][1000 genomes]
rs35650342	0.87[ASN][1000 genomes]
rs35902227	0.87[ASN][1000 genomes]
rs35980102	0.87[ASN][1000 genomes]
rs67217502	0.87[ASN][1000 genomes]
rs67964536	0.87[ASN][1000 genomes]
rs706603	0.87[ASN][1000 genomes]
rs71428294	0.87[ASN][1000 genomes]
rs71436217	0.87[ASN][1000 genomes]
rs71436218	0.87[ASN][1000 genomes]
rs71436219	0.87[ASN][1000 genomes]
rs71436220	0.87[ASN][1000 genomes]
rs71436222	0.87[ASN][1000 genomes]
rs71436227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990202	0.87[ASN][1000 genomes]
rs806315	0.87[ASN][1000 genomes]
rs806318	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50996600-51022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51017600-51020200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:51017600-51021200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51018800-51019400	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr13:51018800-51020200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:51018800-51020600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:51018800-51020800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:51019000-51019600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr13:51019000-51019600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:51019000-51019600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr13:51019000-51020000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:51019000-51020600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:51019000-51021000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr13:51019200-51019600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:51019200-51022200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:51019200-51022400	Weak transcription	Psoas Muscle	Psoas
17	chr13:51019200-51023600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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