Variant report

Variant	rs3095164
Chromosome Location	chr13:51013713-51013714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51012510..51015441-chr13:51017155..51018787,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11842790	0.87[ASN][1000 genomes]
rs12853498	0.87[ASN][1000 genomes]
rs12855386	0.87[ASN][1000 genomes]
rs12858133	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12866532	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867018	0.87[ASN][1000 genomes]
rs12871645	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12871937	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12874278	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs12874827	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12876227	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs149872	0.81[CEU][hapmap]
rs17074093	0.87[ASN][1000 genomes]
rs17074141	0.87[ASN][1000 genomes]
rs17074143	0.87[ASN][1000 genomes]
rs17074145	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17363026	0.87[ASN][1000 genomes]
rs17363566	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs182187	0.93[EUR][1000 genomes]
rs201765	0.81[CEU][hapmap]
rs2066664	0.87[ASN][1000 genomes]
rs2066673	0.87[ASN][1000 genomes]
rs2066679	0.87[ASN][1000 genomes]
rs3095158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095165	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3116594	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3116595	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118649	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3118650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34042295	0.87[ASN][1000 genomes]
rs34357487	0.87[ASN][1000 genomes]
rs34374535	0.87[ASN][1000 genomes]
rs34453016	0.87[ASN][1000 genomes]
rs34556868	0.87[ASN][1000 genomes]
rs34700115	0.87[ASN][1000 genomes]
rs34712361	0.87[ASN][1000 genomes]
rs34972893	0.87[ASN][1000 genomes]
rs35299189	0.87[ASN][1000 genomes]
rs35383320	0.87[ASN][1000 genomes]
rs35413012	0.87[ASN][1000 genomes]
rs35542898	0.87[ASN][1000 genomes]
rs35650342	0.87[ASN][1000 genomes]
rs35902227	0.87[ASN][1000 genomes]
rs35980102	0.87[ASN][1000 genomes]
rs67217502	0.87[ASN][1000 genomes]
rs67964536	0.87[ASN][1000 genomes]
rs706603	0.87[ASN][1000 genomes]
rs71428294	0.87[ASN][1000 genomes]
rs71436217	0.87[ASN][1000 genomes]
rs71436218	0.87[ASN][1000 genomes]
rs71436219	0.87[ASN][1000 genomes]
rs71436220	0.87[ASN][1000 genomes]
rs71436222	0.87[ASN][1000 genomes]
rs71436227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990202	0.87[ASN][1000 genomes]
rs806315	0.87[ASN][1000 genomes]
rs806318	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832609	chr13:50946577-51065968	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50992200-51014600	Weak transcription	HepG2	liver
2	chr13:50996600-51022200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:51011200-51014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:51012000-51015800	Weak transcription	NHDF-Ad	bronchial
5	chr13:51012200-51015400	Weak transcription	Osteobl	bone
6	chr13:51012600-51019000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:51013600-51015000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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