Variant report

Variant	rs3099443
Chromosome Location	chr5:97953889-97953890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:97947803..97949307-chr5:97953669..97956460,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs152956	0.90[ASN][1000 genomes]
rs152957	0.90[ASN][1000 genomes]
rs152980	0.88[EUR][1000 genomes]
rs152981	0.92[EUR][1000 genomes]
rs152982	0.93[EUR][1000 genomes]
rs152983	0.92[EUR][1000 genomes]
rs152986	0.92[EUR][1000 genomes]
rs152987	0.92[EUR][1000 genomes]
rs152990	0.93[EUR][1000 genomes]
rs171528	0.90[ASN][1000 genomes]
rs193500	0.89[ASN][1000 genomes]
rs251533	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs251535	0.88[ASN][1000 genomes]
rs25741	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs25742	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs25743	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs25744	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27029	0.89[ASN][1000 genomes]
rs27030	0.88[ASN][1000 genomes]
rs27738	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs27786	0.88[ASN][1000 genomes]
rs27870	0.89[ASN][1000 genomes]
rs27971	0.89[ASN][1000 genomes]
rs29661	0.88[ASN][1000 genomes]
rs29670	0.88[ASN][1000 genomes]
rs29671	0.93[EUR][1000 genomes]
rs29733	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs29734	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs29735	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs29736	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs29770	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs29772	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs29773	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36759	0.88[ASN][1000 genomes]
rs36760	0.88[ASN][1000 genomes]
rs36761	0.88[ASN][1000 genomes]
rs36762	0.88[ASN][1000 genomes]
rs36763	0.85[ASN][1000 genomes]
rs40263	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs467763	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs468674	0.88[ASN][1000 genomes]
rs469191	0.89[ASN][1000 genomes]
rs622487	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97946400-97967200	Weak transcription	HSMMtube	muscle
2	chr5:97952400-97954400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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