Variant report

Variant	rs3101573
Chromosome Location	chr13:96484748-96484749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1093275	1.00[EUR][1000 genomes]
rs17885047	1.00[EUR][1000 genomes]
rs3101572	1.00[EUR][1000 genomes]
rs3125432	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3125437	1.00[EUR][1000 genomes]
rs478025	1.00[EUR][1000 genomes]
rs509323	1.00[EUR][1000 genomes]
rs524961	1.00[EUR][1000 genomes]
rs534493	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs548964	1.00[EUR][1000 genomes]
rs555120	1.00[EUR][1000 genomes]
rs559847	1.00[EUR][1000 genomes]
rs562356	1.00[EUR][1000 genomes]
rs574109	1.00[EUR][1000 genomes]
rs592640	1.00[EUR][1000 genomes]
rs687921	1.00[EUR][1000 genomes]
rs8000598	1.00[EUR][1000 genomes]
rs816137	1.00[EUR][1000 genomes]
rs816138	1.00[EUR][1000 genomes]
rs816141	1.00[EUR][1000 genomes]
rs9525075	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9525076	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584316	1.00[EUR][1000 genomes]
rs9584319	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832691	chr13:96478098-96659823	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
2	chr13:96445800-96490000	Weak transcription	HepG2	liver
3	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
4	chr13:96462600-96485600	Weak transcription	Hela-S3	cervix
5	chr13:96466400-96485400	Weak transcription	NHEK	skin
6	chr13:96466400-96486000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:96466600-96485800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr13:96466800-96485800	Weak transcription	Brain Anterior Caudate	brain
9	chr13:96467000-96485200	Weak transcription	HUVEC	blood vessel
10	chr13:96467400-96490800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:96468200-96489800	Weak transcription	GM12878-XiMat	blood
12	chr13:96468800-96486000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:96475800-96485600	Weak transcription	HMEC	breast
14	chr13:96476000-96502600	Weak transcription	Fetal Heart	heart
15	chr13:96476400-96489800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:96477400-96486000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:96478000-96485400	Weak transcription	A549	lung
18	chr13:96478000-96485600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:96478000-96485600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr13:96478000-96486000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr13:96478000-96486000	Weak transcription	Adipose Nuclei	Adipose
22	chr13:96478000-96498200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:96478000-96502600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:96478000-96502600	Weak transcription	Left Ventricle	heart
25	chr13:96478000-96568400	Weak transcription	Placenta	Placenta
26	chr13:96478200-96485200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:96478200-96485400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:96478200-96485600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:96478200-96485600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:96478200-96485600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:96478200-96485600	Weak transcription	NHLF	lung
32	chr13:96478200-96485600	Weak transcription	Osteobl	bone
33	chr13:96478200-96485800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:96478200-96485800	Weak transcription	NH-A	brain
35	chr13:96478200-96486000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr13:96478200-96486000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr13:96478200-96486000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr13:96478200-96486400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr13:96478200-96489200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:96478200-96489800	Weak transcription	Fetal Intestine Large	intestine
41	chr13:96478200-96489800	Weak transcription	Fetal Muscle Leg	muscle
42	chr13:96478200-96490000	Weak transcription	Brain Hippocampus Middle	brain
43	chr13:96478200-96490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr13:96478200-96490400	Weak transcription	Liver	Liver
45	chr13:96478200-96490600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr13:96478200-96493600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr13:96478200-96495000	Weak transcription	Lung	lung
48	chr13:96478200-96502200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:96478200-96502600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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