Variant report

Variant	rs3101911
Chromosome Location	chr1:225291737-225291738
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10915779	0.83[ASN][1000 genomes]
rs10915782	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10915783	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10915784	0.90[ASN][1000 genomes]
rs10915787	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11588063	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12067806	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12075556	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12080027	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12562045	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12565737	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12565929	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1395116	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1482279	0.80[AMR][1000 genomes]
rs1506073	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1600531	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1832540	0.82[ASN][1000 genomes]
rs1842331	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1847908	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1847909	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1905114	0.80[AMR][1000 genomes]
rs2128269	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2170109	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2405701	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2405702	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2449257	0.80[AMR][1000 genomes]
rs2449259	0.80[AMR][1000 genomes]
rs2449260	0.80[AMR][1000 genomes]
rs2449273	0.80[AMR][1000 genomes]
rs2449274	0.80[AMR][1000 genomes]
rs2449276	0.80[AMR][1000 genomes]
rs2449279	0.83[AFR][1000 genomes]
rs2449280	0.80[AMR][1000 genomes]
rs2449292	0.80[AMR][1000 genomes]
rs2449303	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2449307	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2449308	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2449311	0.80[AMR][1000 genomes]
rs2449313	0.80[AMR][1000 genomes]
rs2449316	0.80[AMR][1000 genomes]
rs2456328	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2456335	0.80[AMR][1000 genomes]
rs2456339	0.80[AMR][1000 genomes]
rs2456340	0.80[AMR][1000 genomes]
rs2456351	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2489300	0.80[AMR][1000 genomes]
rs2489322	0.80[AMR][1000 genomes]
rs2489325	0.80[AMR][1000 genomes]
rs2489328	0.80[AMR][1000 genomes]
rs2489330	0.80[AMR][1000 genomes]
rs2489332	0.80[AMR][1000 genomes]
rs2489341	0.80[AMR][1000 genomes]
rs2501061	0.80[AMR][1000 genomes]
rs2501064	0.80[AMR][1000 genomes]
rs2501066	0.80[AMR][1000 genomes]
rs2501072	0.80[AMR][1000 genomes]
rs2501073	0.80[AMR][1000 genomes]
rs2501086	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2501107	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2501108	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2501125	0.80[AMR][1000 genomes]
rs2501129	0.80[AMR][1000 genomes]
rs2501130	0.80[AMR][1000 genomes]
rs2501134	0.80[AMR][1000 genomes]
rs2501135	0.80[AMR][1000 genomes]
rs2501140	0.80[AMR][1000 genomes]
rs2501141	0.80[AMR][1000 genomes]
rs2501156	0.80[AMR][1000 genomes]
rs3101904	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3101905	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3101906	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3101909	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3101914	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3101916	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3101917	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3102108	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3102109	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3102110	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3102112	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3102113	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3102115	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3102116	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105551	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105552	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105553	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105554	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105556	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105558	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105559	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105560	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3105561	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3105562	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105563	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105564	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3105565	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105566	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105567	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105568	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105569	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3105572	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3120989	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3120990	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3120991	0.82[ASN][1000 genomes]
rs3120993	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3128643	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128644	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128646	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128649	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128650	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128651	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3128652	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3128653	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3128654	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3128655	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3128656	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3128657	0.81[ASN][1000 genomes]
rs3128658	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128660	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128662	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3128664	0.82[ASN][1000 genomes]
rs3128666	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3128667	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3128668	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3128675	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128676	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56088855	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61041116	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61211002	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6674717	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6683938	0.82[ASN][1000 genomes]
rs6686694	0.82[ASN][1000 genomes]
rs6697382	0.82[ASN][1000 genomes]
rs7521702	0.83[ASN][1000 genomes]
rs7545060	0.84[ASN][1000 genomes]
rs7548138	0.83[ASN][1000 genomes]
rs769296	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs981067	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs995613	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225275600-225312600	Weak transcription	Ovary	ovary

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