Variant report

Variant	rs3102443
Chromosome Location	chr4:143193614-143193615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10029437	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1907109	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907113	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1907117	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1907119	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1948323	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2130685	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2172023	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627812	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627816	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2627817	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627834	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2627835	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2627836	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636632	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636635	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2636641	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636642	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636643	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636647	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636655	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636656	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636657	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636660	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636679	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2636685	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102436	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3102437	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102438	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3102439	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3102444	0.95[EUR][1000 genomes]
rs3102446	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113511	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113513	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3113515	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34648309	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1027781	chr4:142943485-143306567	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830098	chr4:143050143-143234384	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv595604	chr4:143077401-143228914	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830099	chr4:143138257-143285055	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143181600-143195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:143183000-143204800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143185400-143199000	Weak transcription	Psoas Muscle	Psoas
4	chr4:143186600-143199800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:143187400-143197200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:143187400-143199400	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:143187400-143199400	Weak transcription	NH-A	brain
8	chr4:143187400-143200400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:143187400-143203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:143187400-143218600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:143187600-143194600	Weak transcription	NHLF	lung
12	chr4:143187600-143196000	Weak transcription	A549	lung
13	chr4:143187600-143200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:143187800-143194000	Weak transcription	NHEK	skin
15	chr4:143188800-143194000	Weak transcription	NHDF-Ad	bronchial
16	chr4:143190600-143195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:143190800-143194000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:143191600-143194000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:143191600-143194600	Weak transcription	HSMM	muscle
20	chr4:143191800-143195000	Weak transcription	HUVEC	blood vessel
21	chr4:143191800-143195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:143192000-143194000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:143192000-143194800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:143192000-143194800	Weak transcription	HSMMtube	muscle
25	chr4:143192000-143195200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:143192000-143195800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:143192000-143196200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr4:143192000-143210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:143192000-143219400	Weak transcription	Dnd41	blood
30	chr4:143192200-143198800	Weak transcription	Primary T cells from cord blood	blood
31	chr4:143192200-143203800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:143192200-143206000	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr4:143192600-143194000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr4:143192800-143193800	Weak transcription	HMEC	breast
35	chr4:143192800-143194200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:143192800-143194400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:143192800-143196000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr4:143192800-143197200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:143192800-143199000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:143193600-143194800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:143193600-143196000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:143193600-143197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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