Variant report

Variant	rs3102707
Chromosome Location	chr15:77085740-77085741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77085685..77088111-chr15:77091340..77093808,2	K562	blood:

Variant related genes	Relation type
ENSG00000140386	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1499019	1.00[AMR][1000 genomes]
rs1499020	1.00[AMR][1000 genomes]
rs1499022	1.00[AMR][1000 genomes]
rs1867196	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs2120112	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404735	1.00[AMR][1000 genomes]
rs2439983	1.00[AMR][1000 genomes]
rs2468117	1.00[AMR][1000 genomes]
rs2468125	1.00[AMR][1000 genomes]
rs2469205	0.81[YRI][hapmap]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2585728	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs279991	1.00[AMR][1000 genomes]
rs279993	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs279994	1.00[AMR][1000 genomes]
rs279995	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs279998	0.83[AMR][1000 genomes]
rs280004	1.00[AMR][1000 genomes]
rs280017	0.87[YRI][hapmap]
rs280019	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs280021	0.88[YRI][hapmap]
rs280022	0.89[YRI][hapmap]
rs280027	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs280031	0.89[YRI][hapmap]
rs280034	0.88[YRI][hapmap]
rs280035	1.00[AMR][1000 genomes]
rs28391551	0.86[AFR][1000 genomes]
rs28744566	0.81[YRI][hapmap]
rs3099135	0.81[AFR][1000 genomes]
rs3099141	0.83[AFR][1000 genomes]
rs3099144	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs3099145	0.85[AFR][1000 genomes]
rs3099148	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs3102711	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3102715	0.81[YRI][hapmap]
rs3102718	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs3110377	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs3110386	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs8038253	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:77058000-77100200	Weak transcription	Fetal Brain Male	brain
6	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:77067400-77086000	Weak transcription	Brain Angular Gyrus	brain
8	chr15:77069600-77085800	Weak transcription	Brain Germinal Matrix	brain
9	chr15:77070000-77093600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:77070000-77097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:77073000-77091800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:77073000-77093800	Weak transcription	Gastric	stomach
13	chr15:77073000-77101000	Weak transcription	Lung	lung
14	chr15:77073000-77101400	Weak transcription	Right Ventricle	heart
15	chr15:77073000-77109200	Weak transcription	Spleen	Spleen
16	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
17	chr15:77073200-77091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:77075800-77092000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:77076600-77098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:77077000-77089000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:77078200-77103000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:77078600-77087600	Weak transcription	Fetal Intestine Small	intestine
23	chr15:77078600-77091800	Weak transcription	Esophagus	oesophagus
24	chr15:77079600-77097800	Weak transcription	HSMMtube	muscle
25	chr15:77080400-77092000	Weak transcription	HMEC	breast
26	chr15:77082400-77086400	Strong transcription	Primary B cells from cord blood	blood
27	chr15:77082600-77087600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr15:77082600-77096400	Weak transcription	Colonic Mucosa	Colon
29	chr15:77082800-77087800	Strong transcription	Liver	Liver
30	chr15:77083000-77085800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:77083000-77087800	Strong transcription	Dnd41	blood
32	chr15:77083000-77088600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:77083200-77087000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr15:77083200-77087600	Strong transcription	Fetal Thymus	thymus
35	chr15:77083200-77087800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:77083200-77087800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:77083200-77088200	Strong transcription	Fetal Intestine Large	intestine
38	chr15:77083400-77085800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:77083400-77086200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:77083400-77086400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:77083400-77086400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:77083400-77087000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr15:77083400-77087400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:77083600-77086400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:77083600-77086600	Strong transcription	Primary T cells from cord blood	blood
46	chr15:77083600-77087000	Strong transcription	Ovary	ovary
47	chr15:77083600-77087800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr15:77083600-77097600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:77083800-77085800	Weak transcription	Fetal Brain Female	brain
50	chr15:77083800-77087200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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