Variant report

Variant	rs3102711
Chromosome Location	chr15:77061110-77061111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1499019	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1499020	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1499022	1.00[AMR][1000 genomes]
rs157770	1.00[AMR][1000 genomes]
rs157771	0.83[AMR][1000 genomes]
rs157772	1.00[AMR][1000 genomes]
rs157773	1.00[AMR][1000 genomes]
rs166905	1.00[AMR][1000 genomes]
rs1867196	0.87[YRI][hapmap]
rs2120112	0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2404735	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2439983	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2454452	0.80[YRI][hapmap]
rs2468117	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs2468125	1.00[AMR][1000 genomes]
rs2469240	1.00[AMR][1000 genomes]
rs2469243	1.00[AMR][1000 genomes]
rs2585728	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs279991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs279993	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs279994	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs279995	1.00[AMR][1000 genomes]
rs279998	0.83[AMR][1000 genomes]
rs280004	1.00[AMR][1000 genomes]
rs280017	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs280019	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280021	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs280022	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs280027	0.94[YRI][hapmap];0.98[AFR][1000 genomes]
rs280031	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs280034	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs280035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs283786	1.00[AMR][1000 genomes]
rs2930684	0.84[AFR][1000 genomes]
rs3099135	0.91[AFR][1000 genomes]
rs3099141	0.93[AFR][1000 genomes]
rs3099144	1.00[AMR][1000 genomes]
rs3099145	0.94[AFR][1000 genomes]
rs3099148	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs3102707	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3102717	0.81[AFR][1000 genomes]
rs3102718	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs3106379	0.87[AFR][1000 genomes]
rs3110377	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs3110386	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs415439	1.00[AMR][1000 genomes]
rs560598	1.00[AMR][1000 genomes]
rs8038253	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77046800-77067800	Weak transcription	HUVEC	blood vessel
2	chr15:77055000-77064000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:77056800-77067600	Weak transcription	Osteobl	bone
4	chr15:77056800-77068600	Weak transcription	HSMMtube	muscle
5	chr15:77056800-77083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:77057000-77062400	Weak transcription	NHLF	lung
7	chr15:77057000-77066200	Weak transcription	Brain Anterior Caudate	brain
8	chr15:77057000-77066600	Weak transcription	HSMM	muscle
9	chr15:77057000-77068600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:77057000-77068600	Weak transcription	Psoas Muscle	Psoas
11	chr15:77057000-77068800	Weak transcription	Fetal Stomach	stomach
12	chr15:77057000-77068800	Weak transcription	Pancreas	Pancrea
13	chr15:77057000-77072200	Weak transcription	Aorta	Aorta
14	chr15:77057000-77072200	Weak transcription	Esophagus	oesophagus
15	chr15:77057000-77072600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:77057000-77074200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:77057000-77083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:77057000-77084600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:77057000-77084800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:77057200-77067000	Weak transcription	Brain Angular Gyrus	brain
23	chr15:77057200-77069000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:77057200-77072400	Weak transcription	Right Ventricle	heart
25	chr15:77057200-77073000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:77057400-77064800	Weak transcription	Fetal Lung	lung
28	chr15:77057400-77067800	Weak transcription	NHEK	skin
29	chr15:77057600-77067000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:77057600-77068600	Weak transcription	NHDF-Ad	bronchial
31	chr15:77057600-77069000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:77057800-77064800	Weak transcription	A549	lung
33	chr15:77057800-77068200	Weak transcription	Hela-S3	cervix
34	chr15:77057800-77068800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:77057800-77078000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:77058000-77064000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:77058000-77064800	Weak transcription	Colon Smooth Muscle	Colon
39	chr15:77058000-77066400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:77058000-77066600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:77058000-77066600	Weak transcription	Placenta	Placenta
42	chr15:77058000-77066800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:77058000-77066800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:77058000-77066800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr15:77058000-77067000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:77058000-77067000	Weak transcription	Primary B cells from cord blood	blood
47	chr15:77058000-77067000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:77058000-77068400	Weak transcription	Primary T cells from cord blood	blood
49	chr15:77058000-77068600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:77058000-77068600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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