Variant report

Variant	rs3102714
Chromosome Location	chr15:77058531-77058532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77051074..77052943-chr15:77058188..77061067,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10431768	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10851890	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1114717	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12442966	0.81[EUR][1000 genomes]
rs1398241	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1443110	0.82[EUR][1000 genomes]
rs166794	0.87[EUR][1000 genomes]
rs1905694	0.87[EUR][1000 genomes]
rs2011635	0.84[EUR][1000 genomes]
rs203753	0.87[EUR][1000 genomes]
rs2046415	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2063542	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2170998	0.90[EUR][1000 genomes]
rs2439982	0.82[EUR][1000 genomes]
rs2439984	0.82[EUR][1000 genomes]
rs2454453	0.82[EUR][1000 genomes]
rs2468120	0.82[EUR][1000 genomes]
rs2468122	0.81[EUR][1000 genomes]
rs2468123	0.81[EUR][1000 genomes]
rs2585730	0.87[EUR][1000 genomes]
rs2629021	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2629025	0.82[EUR][1000 genomes]
rs2629034	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs279997	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs279999	0.87[EUR][1000 genomes]
rs280001	0.90[EUR][1000 genomes]
rs280005	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs280008	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs280009	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs280012	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs280013	0.87[EUR][1000 genomes]
rs280014	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs280024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs280028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs280029	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs280030	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs280033	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2930681	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3099134	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3099137	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3099138	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3099140	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3099142	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3099143	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3102709	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3102710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3102712	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3102713	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3106375	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3106377	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3106378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3106380	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110378	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110379	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110381	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110384	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35373913	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35645941	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4583202	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4886831	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4886832	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7172639	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174048	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7178759	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs901008	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053924	chr15:76803849-77089079	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904401	chr15:76816015-77085283	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv904406	chr15:76869929-77085283	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904408	chr15:76884127-77085283	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv904411	chr15:76893186-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv904412	chr15:76910031-77085283	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77046800-77067800	Weak transcription	HUVEC	blood vessel
2	chr15:77051400-77059400	Strong transcription	Liver	Liver
3	chr15:77055000-77064000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:77056800-77059000	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:77056800-77059600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:77056800-77067600	Weak transcription	Osteobl	bone
7	chr15:77056800-77068600	Weak transcription	HSMMtube	muscle
8	chr15:77056800-77083400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:77057000-77058600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:77057000-77058600	Weak transcription	Stomach Mucosa	stomach
11	chr15:77057000-77059000	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:77057000-77059200	Strong transcription	Adipose Nuclei	Adipose
13	chr15:77057000-77059200	Strong transcription	Brain Germinal Matrix	brain
14	chr15:77057000-77059200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:77057000-77059400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:77057000-77059400	Weak transcription	Lung	lung
17	chr15:77057000-77059600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:77057000-77060600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:77057000-77062400	Weak transcription	NHLF	lung
20	chr15:77057000-77066200	Weak transcription	Brain Anterior Caudate	brain
21	chr15:77057000-77066600	Weak transcription	HSMM	muscle
22	chr15:77057000-77068600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:77057000-77068600	Weak transcription	Psoas Muscle	Psoas
24	chr15:77057000-77068800	Weak transcription	Fetal Stomach	stomach
25	chr15:77057000-77068800	Weak transcription	Pancreas	Pancrea
26	chr15:77057000-77072200	Weak transcription	Aorta	Aorta
27	chr15:77057000-77072200	Weak transcription	Esophagus	oesophagus
28	chr15:77057000-77072600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr15:77057000-77074200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr15:77057000-77083600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:77057000-77084600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr15:77057000-77084800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:77057000-77092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:77057000-77097200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:77057200-77067000	Weak transcription	Brain Angular Gyrus	brain
36	chr15:77057200-77069000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:77057200-77072400	Weak transcription	Right Ventricle	heart
38	chr15:77057200-77073000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr15:77057400-77064800	Weak transcription	Fetal Lung	lung
41	chr15:77057400-77067800	Weak transcription	NHEK	skin
42	chr15:77057600-77059200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr15:77057600-77059600	Strong transcription	Fetal Intestine Large	intestine
44	chr15:77057600-77059600	Strong transcription	Dnd41	blood
45	chr15:77057600-77067000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:77057600-77068600	Weak transcription	NHDF-Ad	bronchial
47	chr15:77057600-77069000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:77057800-77059400	Weak transcription	Spleen	Spleen
49	chr15:77057800-77060400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:77057800-77064800	Weak transcription	A549	lung

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