Variant report

Variant	rs3105566
Chromosome Location	chr1:225275824-225275825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 291 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:286)

rs_ID	r²[population]
rs10158933	0.91[EUR][1000 genomes]
rs10495228	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap]
rs10495229	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs10495230	0.97[EUR][1000 genomes]
rs10915779	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs10915782	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10915783	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10915784	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10915787	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11588063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12075556	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12080027	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12561993	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes]
rs12562045	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12562085	0.93[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs12563033	0.84[EUR][1000 genomes]
rs12563286	0.88[EUR][1000 genomes]
rs12563857	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs12564045	0.92[JPT][hapmap]
rs12565073	0.85[EUR][1000 genomes]
rs12565401	0.97[EUR][1000 genomes]
rs12565439	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs12565737	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12565823	0.97[EUR][1000 genomes]
rs12565929	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12566434	0.82[EUR][1000 genomes]
rs12566857	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs12567091	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs12567499	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes]
rs12567812	0.85[EUR][1000 genomes]
rs12568142	0.85[EUR][1000 genomes]
rs12568753	0.91[EUR][1000 genomes]
rs1395116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1480104	0.88[EUR][1000 genomes]
rs1482279	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1482280	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes]
rs1506069	0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs1506070	1.00[CEU][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs1506071	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1506073	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1506074	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1542571	0.91[EUR][1000 genomes]
rs1587980	0.85[EUR][1000 genomes]
rs1600531	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1600532	0.97[EUR][1000 genomes]
rs16843950	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs16843956	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes]
rs16843988	1.00[CEU][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes]
rs16843997	0.97[EUR][1000 genomes]
rs16844005	0.97[EUR][1000 genomes]
rs16844334	0.94[EUR][1000 genomes]
rs16844355	1.00[CEU][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes]
rs16844377	0.93[JPT][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes]
rs16844400	0.88[EUR][1000 genomes]
rs16858661	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs16858758	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap]
rs16858829	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs16858831	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs16858932	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs16858962	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1832540	0.88[ASN][1000 genomes]
rs1842331	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1847908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905113	0.85[EUR][1000 genomes]
rs1905114	1.00[CEU][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1905115	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs1905117	0.85[EUR][1000 genomes]
rs1934203	0.88[EUR][1000 genomes]
rs1961688	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1982707	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs2086368	1.00[CEU][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes]
rs2128267	0.97[EUR][1000 genomes]
rs2128268	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2128269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2170109	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199832	0.88[EUR][1000 genomes]
rs2291227	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs2405701	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2405702	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2449256	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2449257	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449258	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2449259	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449260	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449273	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449274	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449276	1.00[CEU][hapmap];0.93[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449279	0.91[AFR][1000 genomes]
rs2449280	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449281	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2449287	0.84[ASN][1000 genomes]
rs2449292	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449303	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2449304	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2449305	0.83[AFR][1000 genomes]
rs2449306	0.83[AFR][1000 genomes]
rs2449307	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2449308	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2449311	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449313	0.86[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2449316	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2449322	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2449327	0.81[AMR][1000 genomes]
rs2456328	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2456335	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2456336	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2456339	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2456340	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2456341	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2456344	0.83[AFR][1000 genomes]
rs2456349	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2456350	0.83[AFR][1000 genomes]
rs2456351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2456354	0.83[AFR][1000 genomes]
rs2489298	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2489300	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489301	0.80[AMR][1000 genomes]
rs2489302	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489322	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2489325	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489327	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2489328	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489330	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489332	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489337	0.88[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2489341	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489343	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2489344	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2489346	0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2489348	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2489352	0.94[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2501061	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501064	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501066	0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501068	0.86[AMR][1000 genomes]
rs2501072	1.00[CEU][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501073	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501078	0.92[JPT][hapmap]
rs2501081	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501100	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2501101	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2501103	0.83[AFR][1000 genomes]
rs2501107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2501108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2501110	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2501112	0.83[AFR][1000 genomes]
rs2501114	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs2501125	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2501127	0.81[EUR][1000 genomes]
rs2501129	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2501130	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2501133	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2501134	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501135	1.00[CEU][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes]
rs2501140	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501141	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501143	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501153	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2501156	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28502629	0.86[EUR][1000 genomes]
rs2929626	0.85[ASN][1000 genomes]
rs2939363	0.94[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3003126	0.82[AFR][1000 genomes]
rs3101904	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3101905	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3101906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101907	0.97[EUR][1000 genomes]
rs3101908	1.00[CEU][hapmap];0.93[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs3101909	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101910	0.85[ASN][1000 genomes]
rs3101911	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3101914	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3101915	0.97[EUR][1000 genomes]
rs3101916	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3101917	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3101919	0.97[EUR][1000 genomes]
rs3102106	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3102108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102109	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3102110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3102114	0.97[EUR][1000 genomes]
rs3102115	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3102116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105549	0.97[EUR][1000 genomes]
rs3105551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105553	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3105554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105555	0.97[EUR][1000 genomes]
rs3105556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3105561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3105562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3105563	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3105564	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3105565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105567	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105568	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105569	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105570	0.97[EUR][1000 genomes]
rs3105571	0.97[EUR][1000 genomes]
rs3105572	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3105575	0.88[EUR][1000 genomes]
rs3120985	0.97[EUR][1000 genomes]
rs3120987	0.86[ASN][1000 genomes]
rs3120989	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3120990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3120991	0.91[ASN][1000 genomes]
rs3120992	0.97[EUR][1000 genomes]
rs3120993	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3128643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128651	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3128652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3128653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3128654	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128655	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3128656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3128657	0.90[ASN][1000 genomes]
rs3128658	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128659	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes]
rs3128660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3128662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3128663	0.97[EUR][1000 genomes]
rs3128664	0.91[ASN][1000 genomes]
rs3128665	0.97[EUR][1000 genomes]
rs3128666	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs3128667	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3128668	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3128669	0.97[EUR][1000 genomes]
rs3128670	0.88[EUR][1000 genomes]
rs3128675	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3128676	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3991317	0.88[EUR][1000 genomes]
rs4342820	0.91[EUR][1000 genomes]
rs55681905	0.97[EUR][1000 genomes]
rs55785201	0.97[EUR][1000 genomes]
rs55786647	0.85[EUR][1000 genomes]
rs55876129	0.85[EUR][1000 genomes]
rs55962425	0.85[EUR][1000 genomes]
rs56061128	0.97[EUR][1000 genomes]
rs56088855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56107523	0.91[EUR][1000 genomes]
rs56251723	0.97[EUR][1000 genomes]
rs56337810	0.97[EUR][1000 genomes]
rs57889280	0.85[EUR][1000 genomes]
rs58279596	0.91[EUR][1000 genomes]
rs60392992	0.94[EUR][1000 genomes]
rs60692803	0.91[EUR][1000 genomes]
rs61041116	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61211002	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61849768	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6426049	0.91[EUR][1000 genomes]
rs6426052	0.91[EUR][1000 genomes]
rs6662231	0.91[EUR][1000 genomes]
rs6674717	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6683938	0.88[ASN][1000 genomes]
rs6686694	0.88[ASN][1000 genomes]
rs6693155	0.93[JPT][hapmap]
rs6697156	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs6697382	0.88[ASN][1000 genomes]
rs6702926	0.91[EUR][1000 genomes]
rs7517625	0.97[EUR][1000 genomes]
rs7521702	0.89[ASN][1000 genomes]
rs7523949	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs7531542	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs7545060	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7547639	0.97[EUR][1000 genomes]
rs7548138	0.89[ASN][1000 genomes]
rs769295	0.94[EUR][1000 genomes]
rs769296	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9663018	0.81[ASN][1000 genomes]
rs973980	0.91[EUR][1000 genomes]
rs981067	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs981068	0.91[EUR][1000 genomes]
rs995613	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225256400-225277400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:225261200-225279200	Weak transcription	Pancreas	Pancrea
3	chr1:225274600-225276000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:225275600-225312600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links