Variant report

Variant	rs3107240
Chromosome Location	chr3:81774668-81774669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:81772749..81775222-chr3:81775343..81777463,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11127737	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1155277	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375086	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2594547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2594549	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2594551	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2594553	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2594558	0.82[AMR][1000 genomes]
rs2680245	0.82[AMR][1000 genomes]
rs2680246	0.82[AMR][1000 genomes]
rs2680257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680264	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2680277	0.82[AMR][1000 genomes]
rs3772889	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772899	0.82[EUR][1000 genomes]
rs3772902	0.82[EUR][1000 genomes]
rs6771266	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6803932	0.80[AMR][1000 genomes]
rs7648237	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9309876	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9818090	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9838088	0.81[EUR][1000 genomes]
rs9852545	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9860805	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1009607	chr3:81651419-81825151	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv536604	chr3:81651419-81825151	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv834749	chr3:81655377-81818880	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81727200-81792200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:81755800-81781000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:81763200-81775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:81766600-81778400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:81766600-81791200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:81766800-81776000	Weak transcription	NHLF	lung
7	chr3:81766800-81776200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:81766800-81776800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:81767400-81778400	Weak transcription	Left Ventricle	heart
10	chr3:81767800-81775800	Weak transcription	Psoas Muscle	Psoas
11	chr3:81768600-81774800	Weak transcription	Dnd41	blood
12	chr3:81772400-81778400	Weak transcription	Aorta	Aorta
13	chr3:81773000-81775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:81773000-81778400	Weak transcription	Right Atrium	heart
15	chr3:81773000-81780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:81773200-81775200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:81773200-81775400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:81773200-81775400	Enhancers	HUVEC	blood vessel
19	chr3:81773200-81778200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:81773200-81778400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr3:81773200-81792200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:81773400-81774800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:81773400-81775200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:81773400-81775400	Enhancers	A549	lung
25	chr3:81773400-81775400	Weak transcription	HSMMtube	muscle
26	chr3:81773400-81775400	Weak transcription	NH-A	brain
27	chr3:81773400-81775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:81773400-81776200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:81773400-81778400	Weak transcription	Right Ventricle	heart
30	chr3:81773400-81783600	Weak transcription	HepG2	liver
31	chr3:81773600-81774800	Weak transcription	HSMM	muscle
32	chr3:81773800-81774800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:81773800-81774800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:81773800-81775000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:81774000-81775200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:81774200-81774800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:81774200-81775000	Weak transcription	Hela-S3	cervix
38	chr3:81774200-81775000	Weak transcription	Osteobl	bone
39	chr3:81774200-81775200	Weak transcription	NHDF-Ad	bronchial
40	chr3:81774200-81776200	Weak transcription	Liver	Liver
41	chr3:81774200-81776400	Weak transcription	Brain Anterior Caudate	brain
42	chr3:81774200-81777200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:81774200-81780600	Weak transcription	Brain Substantia Nigra	brain
44	chr3:81774600-81784200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links