Variant report

Variant	rs3110380
Chromosome Location	chr15:77097355-77097356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1020280	1.00[AMR][1000 genomes]
rs1867196	1.00[AMR][1000 genomes]
rs2015132	1.00[AMR][1000 genomes]
rs2454452	1.00[AMR][1000 genomes]
rs279993	0.92[AFR][1000 genomes]
rs279995	0.92[AFR][1000 genomes]
rs279996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs279998	0.80[AFR][1000 genomes]
rs280004	0.92[AFR][1000 genomes]
rs280017	1.00[AMR][1000 genomes]
rs280021	1.00[AMR][1000 genomes]
rs280022	1.00[AMR][1000 genomes]
rs280027	1.00[AMR][1000 genomes]
rs280031	1.00[AMR][1000 genomes]
rs28421596	0.82[AFR][1000 genomes]
rs28644501	0.82[AFR][1000 genomes]
rs28744566	0.84[AFR][1000 genomes]
rs2930684	1.00[AMR][1000 genomes]
rs3099144	0.97[AFR][1000 genomes]
rs3099145	1.00[AMR][1000 genomes]
rs3099148	0.92[AFR][1000 genomes]
rs3102715	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3102718	0.92[AFR][1000 genomes]
rs3110376	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77057200-77098400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:77057800-77098200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:77058000-77100200	Weak transcription	Fetal Brain Male	brain
4	chr15:77058000-77106000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:77073000-77101000	Weak transcription	Lung	lung
6	chr15:77073000-77101400	Weak transcription	Right Ventricle	heart
7	chr15:77073000-77109200	Weak transcription	Spleen	Spleen
8	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
9	chr15:77076600-77098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:77078200-77103000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:77079600-77097800	Weak transcription	HSMMtube	muscle
12	chr15:77083600-77097600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:77083800-77097800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:77083800-77098000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:77084000-77100400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:77084000-77100600	Weak transcription	GM12878-XiMat	blood
17	chr15:77084000-77100800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:77084400-77098000	Weak transcription	Small Intestine	intestine
19	chr15:77084800-77098200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:77085200-77098400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:77085400-77125000	Weak transcription	HSMM	muscle
22	chr15:77085800-77104400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:77086200-77097600	Weak transcription	Hela-S3	cervix
24	chr15:77086200-77097800	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:77086400-77097800	Weak transcription	Brain Germinal Matrix	brain
26	chr15:77086400-77098400	Weak transcription	Brain Substantia Nigra	brain
27	chr15:77086400-77100600	Weak transcription	Aorta	Aorta
28	chr15:77086400-77101600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:77086400-77111000	Weak transcription	Thymus	Thymus
30	chr15:77087200-77098400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr15:77087400-77099200	Weak transcription	Fetal Kidney	kidney
32	chr15:77087600-77097400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:77087600-77098400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:77089800-77097800	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:77090600-77107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:77092200-77097600	Weak transcription	K562	blood
37	chr15:77092200-77098200	Weak transcription	Fetal Intestine Small	intestine
38	chr15:77092200-77100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:77092400-77097600	Weak transcription	Esophagus	oesophagus
40	chr15:77092400-77098000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr15:77092400-77098000	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:77092400-77098400	Weak transcription	Fetal Stomach	stomach
43	chr15:77092400-77098600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:77092800-77097600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:77092800-77124800	Weak transcription	Ovary	ovary
46	chr15:77093000-77097800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr15:77093000-77098400	Weak transcription	HepG2	liver
48	chr15:77093200-77124800	Weak transcription	Primary B cells from cord blood	blood
49	chr15:77093800-77103400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr15:77094600-77097400	Strong transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links