Variant report

Variant	rs3110383
Chromosome Location	chr15:77144640-77144641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072640	1.00[AMR][1000 genomes]
rs11853683	1.00[AMR][1000 genomes]
rs12905804	0.97[AFR][1000 genomes]
rs2469198	1.00[AMR][1000 genomes]
rs2469207	1.00[AMR][1000 genomes]
rs2469237	1.00[AMR][1000 genomes]
rs28391551	1.00[AMR][1000 genomes]
rs28402797	1.00[AMR][1000 genomes]
rs28412669	1.00[AMR][1000 genomes]
rs28421596	1.00[AMR][1000 genomes]
rs28508056	1.00[AMR][1000 genomes]
rs28641730	1.00[AMR][1000 genomes]
rs28644501	1.00[AMR][1000 genomes]
rs28744566	1.00[AMR][1000 genomes]
rs3099135	1.00[AMR][1000 genomes]
rs3110376	1.00[AMR][1000 genomes]
rs3110377	1.00[AMR][1000 genomes]
rs3110386	1.00[AMR][1000 genomes]
rs4886833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7173333	1.00[AMR][1000 genomes]
rs7178723	1.00[AMR][1000 genomes]
rs8026664	1.00[AMR][1000 genomes]
rs8035685	1.00[AMR][1000 genomes]
rs8038253	1.00[AMR][1000 genomes]
rs8038701	1.00[AMR][1000 genomes]
rs8042617	1.00[ASN][1000 genomes]
rs9920797	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:77120400-77158400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:77123200-77144800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:77123200-77153200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:77124400-77149600	Weak transcription	HepG2	liver
7	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:77126000-77145600	Weak transcription	Aorta	Aorta
9	chr15:77130600-77147400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:77131200-77155600	Weak transcription	Left Ventricle	heart
11	chr15:77131400-77148000	Weak transcription	Placenta	Placenta
12	chr15:77133200-77147600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:77139800-77145600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:77139800-77155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:77139800-77158400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:77140000-77144800	Weak transcription	NHLF	lung
18	chr15:77140000-77153600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:77140400-77144800	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:77141000-77144800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:77141200-77146400	ZNF genes & repeats	GM12878-XiMat	blood
23	chr15:77141400-77171600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:77141600-77144800	Strong transcription	Fetal Thymus	thymus
25	chr15:77141600-77146800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:77141800-77147400	Weak transcription	Fetal Kidney	kidney
27	chr15:77141800-77168000	Weak transcription	Spleen	Spleen
28	chr15:77142000-77148200	Weak transcription	Gastric	stomach
29	chr15:77142000-77158000	Weak transcription	Brain Angular Gyrus	brain
30	chr15:77142000-77167200	Weak transcription	Esophagus	oesophagus
31	chr15:77142000-77167800	Weak transcription	Pancreas	Pancrea
32	chr15:77142000-77175800	Weak transcription	Fetal Brain Male	brain
33	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
34	chr15:77142200-77145400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:77142200-77167600	Weak transcription	Lung	lung
36	chr15:77142600-77146200	Strong transcription	Ovary	ovary
37	chr15:77142800-77147200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:77142800-77147600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:77142800-77166400	Weak transcription	Thymus	Thymus
40	chr15:77143000-77144800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:77143000-77145400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr15:77143000-77145800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:77143200-77145000	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr15:77143200-77145600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:77143200-77145600	Weak transcription	Fetal Intestine Small	intestine
46	chr15:77143200-77146600	Weak transcription	Fetal Stomach	stomach
47	chr15:77143200-77149800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr15:77143400-77145000	ZNF genes & repeats	Adipose Nuclei	Adipose
49	chr15:77143400-77145600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:77143400-77145800	Weak transcription	Placenta Amnion	Placenta Amnion

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