Variant report

Variant	rs3111237
Chromosome Location	chr1:211373687-211373688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1538285	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1538286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3111228	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3111232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3111236	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3120770	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3120771	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3120772	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3120773	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3120785	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3125842	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3125843	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3125844	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806574	chr1:211369721-211383129	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1808906	chr1:211369721-211383129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211372400-211374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:211372600-211373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211372600-211377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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