Variant report

Variant	rs3111250
Chromosome Location	chr1:211403304-211403305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211403133..211405792-chr1:211432662..211434298,2	MCF-7	breast:
2	chr1:211396380..211397996-chr1:211402427..211405244,2	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10732682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10746434	1.00[ASN][1000 genomes]
rs10779554	1.00[ASN][1000 genomes]
rs10779555	1.00[ASN][1000 genomes]
rs10863886	1.00[CHB][hapmap]
rs10863887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11119706	0.87[EUR][1000 genomes]
rs12043438	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072778	0.91[EUR][1000 genomes]
rs1533219	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1983259	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1983260	1.00[ASN][1000 genomes]
rs2358215	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3111241	0.89[EUR][1000 genomes]
rs3111242	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111247	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111248	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111254	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111256	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3120784	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125834	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125836	0.90[YRI][hapmap]
rs3125840	1.00[ASN][1000 genomes]
rs3125841	1.00[ASN][1000 genomes]
rs3855878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4347268	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4370817	1.00[ASN][1000 genomes]
rs4396171	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4556425	1.00[ASN][1000 genomes]
rs4951517	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951735	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951737	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951738	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951739	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs61218213	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61737773	0.87[EUR][1000 genomes]
rs61848567	1.00[ASN][1000 genomes]
rs6540675	1.00[ASN][1000 genomes]
rs6540676	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6540678	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6657779	1.00[ASN][1000 genomes]
rs6661043	1.00[CHB][hapmap]
rs6663627	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6671526	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6688682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6692815	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7517135	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211397800-211405200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:211400800-211403400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:211401600-211403400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr1:211402000-211403400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:211402200-211403600	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:211402400-211403400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:211402800-211403800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:211403000-211403400	Enhancers	Primary T cells from cord blood	blood
9	chr1:211403000-211403400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr1:211403000-211403400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:211403200-211403400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:211403200-211403400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:211403200-211403400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:211403200-211403400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:211403200-211403800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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