Variant report
| Variant | rs3116613 |
|---|---|
| Chromosome Location | chr13:51143055-51143056 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1327646 | 0.81[EUR][1000 genomes] |
| rs1341637 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2225226 | 0.93[EUR][1000 genomes] |
| rs2408045 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3095527 | 0.81[EUR][1000 genomes] |
| rs3116598 | 0.80[EUR][1000 genomes] |
| rs3116599 | 0.85[EUR][1000 genomes] |
| rs3116600 | 0.86[EUR][1000 genomes] |
| rs3116601 | 0.86[EUR][1000 genomes] |
| rs3116602 | 0.92[EUR][1000 genomes] |
| rs3116603 | 0.92[EUR][1000 genomes] |
| rs3116604 | 0.92[EUR][1000 genomes] |
| rs3116605 | 0.92[EUR][1000 genomes] |
| rs3116606 | 0.92[EUR][1000 genomes] |
| rs3116607 | 0.83[EUR][1000 genomes] |
| rs3116615 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3116616 | 0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3116617 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3118903 | 0.82[EUR][1000 genomes] |
| rs3118909 | 0.86[EUR][1000 genomes] |
| rs3118910 | 0.87[EUR][1000 genomes] |
| rs3118912 | 0.92[EUR][1000 genomes] |
| rs3118913 | 0.91[EUR][1000 genomes] |
| rs3118914 | 0.92[EUR][1000 genomes] |
| rs3118915 | 0.94[EUR][1000 genomes] |
| rs3118918 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3118919 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3118920 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7337757 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035151 | chr13:50513535-51167850 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1254 gene(s) | inside rSNPs | diseases |
| 2 | esv2753964 | chr13:50545399-51421199 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1256 gene(s) | inside rSNPs | diseases |
| 3 | esv2753492 | chr13:50550081-51461720 | Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1256 gene(s) | inside rSNPs | diseases |
| 4 | esv2753864 | chr13:51136699-51375199 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:51142200-51146400 | Weak transcription | Fetal Lung | lung |
