Variant report

Variant	rs3118077
Chromosome Location	chr13:51302310-51302311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2260128	0.98[ASN][1000 genomes]
rs2706234	0.87[EUR][1000 genomes]
rs2706238	0.98[ASN][1000 genomes]
rs2706239	0.86[EUR][1000 genomes]
rs2761839	0.85[ASN][1000 genomes]
rs2761840	0.86[EUR][1000 genomes]
rs2761843	0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs2761853	0.86[EUR][1000 genomes]
rs2761855	0.87[EUR][1000 genomes]
rs2796881	0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs2796882	0.93[CEU][hapmap];0.81[CHB][hapmap]
rs2812237	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2812238	0.84[EUR][1000 genomes]
rs2812240	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2812241	0.87[EUR][1000 genomes]
rs2812244	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs514960	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv561643	chr13:51286083-51306330	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51295400-51306600	Weak transcription	Esophagus	oesophagus
2	chr13:51296600-51304800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr13:51296600-51306600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:51298400-51303000	Enhancers	Dnd41	blood
5	chr13:51299400-51306600	Weak transcription	Left Ventricle	heart
6	chr13:51301400-51307000	Weak transcription	Fetal Heart	heart
7	chr13:51301800-51302400	Enhancers	Fetal Thymus	thymus
8	chr13:51302000-51302400	Enhancers	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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