Variant report

Variant	rs3120129
Chromosome Location	chr10:55340238-55340239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1116926	1.00[AMR][1000 genomes]
rs1489823	1.00[AMR][1000 genomes]
rs1489831	1.00[AMR][1000 genomes]
rs1489841	1.00[AMR][1000 genomes]
rs1489842	1.00[AMR][1000 genomes]
rs1844446	1.00[AMR][1000 genomes]
rs2046803	1.00[AMR][1000 genomes]
rs2488570	1.00[AMR][1000 genomes]
rs351851	1.00[AMR][1000 genomes]
rs382188	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs432864	1.00[AMR][1000 genomes]
rs440002	1.00[AMR][1000 genomes]
rs4935455	1.00[AMR][1000 genomes]
rs6481028	1.00[AMR][1000 genomes]
rs7086098	1.00[AMR][1000 genomes]
rs7099823	1.00[AMR][1000 genomes]
rs7100364	1.00[AMR][1000 genomes]
rs73232463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73232492	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs825774	1.00[AMR][1000 genomes]
rs825775	1.00[AMR][1000 genomes]
rs825776	1.00[AMR][1000 genomes]
rs825777	1.00[AMR][1000 genomes]
rs825817	1.00[AMR][1000 genomes]
rs9415289	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55339000-55340400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:55339400-55340400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:55340000-55340400	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:55340000-55341000	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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