Variant report

Variant	rs3122156
Chromosome Location	chr6:55082807-55082808
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3122160	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs3134710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4311511	0.86[CHB][hapmap]
rs4530845	0.80[TSI][hapmap]
rs73743300	0.83[ASN][1000 genomes]
rs7741664	0.80[EUR][1000 genomes]
rs9357853	0.80[EUR][1000 genomes]
rs9382464	0.93[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs9382471	0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs9382472	0.80[EUR][1000 genomes]
rs9475199	0.82[ASN][1000 genomes]
rs9475200	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3122156	KIAA1586	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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