Variant report

Variant	rs3122160
Chromosome Location	chr6:55084697-55084698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12055777	0.83[ASN][1000 genomes]
rs12055778	0.83[ASN][1000 genomes]
rs3122156	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap]
rs3134710	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4074181	0.84[CHB][hapmap]
rs4311511	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs4496804	0.92[CHB][hapmap]
rs4530845	0.92[CHB][hapmap];0.95[CHD][hapmap];0.80[TSI][hapmap]
rs56843381	0.83[ASN][1000 genomes]
rs6930360	0.81[ASN][1000 genomes]
rs7741664	0.91[CHB][hapmap];0.80[EUR][1000 genomes]
rs7754675	0.84[CHB][hapmap]
rs7771240	0.92[CHB][hapmap];0.95[CHD][hapmap]
rs9349768	0.92[CHB][hapmap];0.95[CHD][hapmap]
rs9349771	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs9349772	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs9349774	0.92[CHB][hapmap];0.95[CHD][hapmap];0.81[ASN][1000 genomes]
rs9357850	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs9357851	0.84[CHB][hapmap];0.95[CHD][hapmap];0.83[ASN][1000 genomes]
rs9357852	0.82[ASN][1000 genomes]
rs9357853	0.92[CHB][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357855	0.84[CHB][hapmap]
rs9367625	0.81[ASN][1000 genomes]
rs9367626	0.84[CHB][hapmap]
rs9382464	0.93[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap]
rs9382471	0.92[CHB][hapmap];0.95[CHD][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs9382472	0.80[EUR][1000 genomes]
rs9396062	0.92[CHB][hapmap]
rs9396069	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs9396070	0.83[ASN][1000 genomes]
rs9396074	0.81[ASN][1000 genomes]
rs9475208	0.92[CHB][hapmap]
rs9475214	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3122160	KIAA1586	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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