Variant report

Variant	rs3122162
Chromosome Location	chr6:55087354-55087355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs3122164	0.95[CEU][hapmap];0.82[YRI][hapmap]
rs3122167	0.90[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3134711	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs4311511	0.95[CEU][hapmap]
rs62416801	0.80[EUR][1000 genomes]
rs6930360	0.92[EUR][1000 genomes]
rs7741664	0.82[EUR][1000 genomes]
rs7771240	0.90[CEU][hapmap]
rs9349772	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs9349774	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs9357853	0.82[EUR][1000 genomes]
rs9382471	0.82[EUR][1000 genomes]
rs9382472	0.82[EUR][1000 genomes]
rs9396069	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs9396074	0.96[EUR][1000 genomes]
rs9464215	0.86[EUR][1000 genomes]
rs9475208	0.91[CEU][hapmap]
rs9475211	0.91[EUR][1000 genomes]
rs9475214	0.91[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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