Variant report

Variant	rs3122169
Chromosome Location	chr6:55113411-55113412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12110721	0.82[CEU][hapmap]
rs2653342	0.93[CEU][hapmap];0.85[TSI][hapmap]
rs2653346	0.80[JPT][hapmap]
rs2811239	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap]
rs6924570	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3122169	ZNF141	trans	parietal	SCAN
rs3122169	ZNF451	cis	parietal	SCAN
rs3122169	HCRTR2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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