Variant report

Variant	rs3123270
Chromosome Location	chr13:51228558-51228559
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12853944	0.83[ASN][1000 genomes]
rs1935174	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794467	0.88[EUR][1000 genomes]
rs3116618	0.83[ASN][1000 genomes]
rs3116619	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3116620	0.92[ASN][1000 genomes]
rs3121210	0.85[ASN][1000 genomes]
rs3121211	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3121212	0.92[ASN][1000 genomes]
rs628413	0.83[EUR][1000 genomes]
rs637310	0.82[ASN][1000 genomes]
rs640923	0.83[EUR][1000 genomes]
rs706597	0.83[EUR][1000 genomes]
rs797474	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51220400-51239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51226400-51232400	Weak transcription	Psoas Muscle	Psoas
3	chr13:51227400-51231000	Weak transcription	Thymus	Thymus
4	chr13:51227600-51230600	Weak transcription	Fetal Thymus	thymus
5	chr13:51228200-51229200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr13:51228400-51228800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr13:51228400-51229200	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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