Variant report

Variant	rs3125829
Chromosome Location	chr1:211405423-211405424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211403133..211405792-chr1:211432662..211434298,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10732682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10746434	1.00[ASN][1000 genomes]
rs10779554	1.00[ASN][1000 genomes]
rs10779555	1.00[ASN][1000 genomes]
rs10863886	1.00[CHB][hapmap]
rs10863887	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11119706	0.89[EUR][1000 genomes]
rs12043438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063878	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072778	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1533219	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1983259	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs1983260	1.00[ASN][1000 genomes]
rs2358215	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3111241	0.91[EUR][1000 genomes]
rs3111242	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111247	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111248	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111256	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3120784	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125828	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125834	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125836	1.00[YRI][hapmap]
rs3125840	1.00[ASN][1000 genomes]
rs3125841	1.00[ASN][1000 genomes]
rs3855878	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs4347268	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4370817	1.00[ASN][1000 genomes]
rs4396171	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4556425	1.00[ASN][1000 genomes]
rs4951517	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951735	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs4951737	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951738	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951739	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4951740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs61218213	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61737773	0.86[EUR][1000 genomes]
rs61848567	1.00[ASN][1000 genomes]
rs6540675	1.00[ASN][1000 genomes]
rs6540676	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs6540678	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6657779	1.00[ASN][1000 genomes]
rs6661043	1.00[CHB][hapmap];0.81[LWK][hapmap]
rs6663627	1.00[CHB][hapmap];0.81[LWK][hapmap];1.00[ASN][1000 genomes]
rs6671526	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6688682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6692815	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7517135	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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