Variant report

Variant	rs3126061
Chromosome Location	chr1:152271781-152271782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11801344	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3120641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3120646	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3120647	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3120649	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3126052	0.89[AFR][1000 genomes]
rs3126059	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3126065	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4361988	0.88[AFR][1000 genomes]
rs9436058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9436059	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3323815	chr1:152267528-152272226	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152264200-152275400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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