Variant report

Variant	rs3133993
Chromosome Location	chrX:74480679-74480680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs3115916	0.89[EUR][1000 genomes]
rs3115917	0.89[EUR][1000 genomes]
rs3115918	0.89[EUR][1000 genomes]
rs3115919	0.89[EUR][1000 genomes]
rs3115921	0.89[EUR][1000 genomes]
rs3115925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115926	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115931	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3115936	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115937	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3115941	1.00[EUR][1000 genomes]
rs3115946	0.94[EUR][1000 genomes]
rs3133986	0.89[EUR][1000 genomes]
rs3133988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133997	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3133998	0.90[EUR][1000 genomes]
rs3133999	1.00[EUR][1000 genomes]
rs3134000	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134001	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134002	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134003	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3134004	1.00[EUR][1000 genomes]
rs3134005	1.00[EUR][1000 genomes]
rs3134006	1.00[EUR][1000 genomes]
rs3134007	1.00[EUR][1000 genomes]
rs3134008	1.00[EUR][1000 genomes]
rs3134009	1.00[EUR][1000 genomes]
rs3134011	1.00[EUR][1000 genomes]
rs3134013	1.00[EUR][1000 genomes]
rs3134016	0.94[EUR][1000 genomes]
rs55691744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55914182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58454714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58866863	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59023505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59797932	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61294318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61467536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61495155	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61708878	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522989	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62523005	0.94[EUR][1000 genomes]
rs62523006	0.94[EUR][1000 genomes]
rs62523009	0.94[EUR][1000 genomes]
rs62523010	0.94[EUR][1000 genomes]
rs62523011	0.94[EUR][1000 genomes]
rs62523014	0.89[EUR][1000 genomes]
rs62523015	0.89[EUR][1000 genomes]
rs62523016	0.89[EUR][1000 genomes]
rs6983462	0.83[EUR][1000 genomes]
rs6989092	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6997830	0.89[EUR][1000 genomes]
rs7006289	0.89[EUR][1000 genomes]
rs7836063	0.89[EUR][1000 genomes]
rs7840040	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534085	chrX:74360310-74516106	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv13841	chrX:74461978-74657064	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532360	chrX:74462926-74651249	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1067730	chrX:74463757-74592761	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv532879	chrX:74463757-74592761	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916109	chrX:74463757-74651249	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74480600-74493600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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