Variant report

Variant	rs3134711
Chromosome Location	chr6:55103892-55103893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55103505..55105321-chr6:55107374..55109522,2	MCF-7	breast:
2	chr6:54740124..54741737-chr6:55103503..55105754,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs3122162	0.90[CEU][hapmap]
rs3122164	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs3122167	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs4311511	0.83[ASW][hapmap];0.95[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap]
rs62416801	0.85[EUR][1000 genomes]
rs6930360	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7741664	0.86[EUR][1000 genomes]
rs7771240	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs9349772	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9349774	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357853	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs9382471	0.84[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs9382472	0.86[EUR][1000 genomes]
rs9396069	1.00[CEU][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9396074	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464215	0.90[EUR][1000 genomes]
rs9475206	0.83[YRI][hapmap]
rs9475208	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs9475210	0.83[YRI][hapmap]
rs9475211	0.96[EUR][1000 genomes]
rs9475214	1.00[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3134711	KIAA1586	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55102400-55104600	Enhancers	Fetal Heart	heart
2	chr6:55103200-55104200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:55103400-55104400	Enhancers	Hela-S3	cervix
4	chr6:55103600-55104200	Enhancers	Brain Germinal Matrix	brain
5	chr6:55103600-55104200	Enhancers	Fetal Intestine Small	intestine
6	chr6:55103600-55104400	Enhancers	HSMMtube	muscle
7	chr6:55103800-55104200	Enhancers	Fetal Lung	lung
8	chr6:55103800-55104400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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