Variant report

Variant	rs3176124
Chromosome Location	chr20:23026945-23026946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23024367..23027840-chr20:23028206..23030938,4	MCF-7	breast:
2	chr20:23025165..23029019-chr20:23031172..23033319,4	K562	blood:
3	chr20:22900035..22903023-chr20:23024141..23027571,3	MCF-7	breast:
4	chr20:22902552..22904666-chr20:23025197..23027691,2	MCF-7	breast:
5	chr20:23025358..23028275-chr20:23031819..23034490,2	K562	blood:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3176122	1.00[TSI][hapmap]
rs73901573	1.00[EUR][1000 genomes]
rs73901575	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482065	chr20:23026271-23030301	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
2	chr20:23021600-23027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:23024200-23028200	Weak transcription	Pancreas	Pancrea
4	chr20:23024600-23031400	Weak transcription	K562	blood
5	chr20:23024800-23027000	Weak transcription	Gastric	stomach
6	chr20:23025400-23027000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
7	chr20:23025800-23027000	Active TSS	Right Atrium	heart
8	chr20:23025800-23028000	Weak transcription	Spleen	Spleen
9	chr20:23025800-23028400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:23026000-23027000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:23026000-23032400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr20:23026200-23027000	Active TSS	Psoas Muscle	Psoas
13	chr20:23026200-23027200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:23026200-23027200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr20:23026400-23027000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr20:23026400-23027000	Bivalent Enhancer	Fetal Lung	lung
17	chr20:23026400-23027000	Active TSS	Lung	lung
18	chr20:23026400-23027600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr20:23026400-23027600	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr20:23026400-23028400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
21	chr20:23026600-23027000	Weak transcription	Esophagus	oesophagus
22	chr20:23026600-23027000	Active TSS	Placenta Amnion	Placenta Amnion
23	chr20:23026600-23027400	Flanking Active TSS	A549	lung
24	chr20:23026600-23027600	Active TSS	Adipose Nuclei	Adipose
25	chr20:23026600-23028200	Enhancers	Stomach Mucosa	stomach
26	chr20:23026600-23029600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
27	chr20:23026600-23030400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr20:23026800-23027000	Flanking Active TSS	HSMMtube	muscle
29	chr20:23026800-23027000	Enhancers	NHEK	skin
30	chr20:23026800-23027200	Flanking Active TSS	HSMM	muscle
31	chr20:23026800-23027400	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr20:23026800-23027400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr20:23026800-23027600	Flanking Active TSS	NHDF-Ad	bronchial
34	chr20:23026800-23028000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr20:23026800-23028000	Enhancers	Placenta	Placenta
36	chr20:23026800-23028200	Active TSS	Right Ventricle	heart
37	chr20:23026800-23028200	Enhancers	HMEC	breast
38	chr20:23026800-23028400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr20:23026800-23029000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
40	chr20:23026800-23032000	Active TSS	Left Ventricle	heart

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