Variant report

Variant	rs319742
Chromosome Location	chr2:211832329-211832330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11684203	1.00[ASN][1000 genomes]
rs11691356	1.00[ASN][1000 genomes]
rs1346709	1.00[ASN][1000 genomes]
rs1346710	1.00[ASN][1000 genomes]
rs1821822	1.00[ASN][1000 genomes]
rs1991564	1.00[ASN][1000 genomes]
rs1992126	1.00[ASN][1000 genomes]
rs319744	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4600582	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4605308	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56856797	1.00[ASN][1000 genomes]
rs59222347	1.00[ASN][1000 genomes]
rs59242499	1.00[ASN][1000 genomes]
rs72949240	1.00[ASN][1000 genomes]
rs796245	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv584310	chr2:211807729-211870954	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211828800-211832400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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