The 2.0 version of rSNPBase

Variant report

Variant rs319940
Chromosome Location chr12:51325298-51325299
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:51319200-51326400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr12:51319400-51346200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr12:51319800-51326200 Weak transcription Primary T cells fromperipheralblood blood
4 chr12:51320200-51330600 Weak transcription Primary T cells from cord blood blood
5 chr12:51320400-51328600 Weak transcription HSMM muscle
6 chr12:51320600-51327400 Weak transcription Placenta Placenta
7 chr12:51320600-51328200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr12:51321000-51325600 Weak transcription H1 Cell Line embryonic stem cell
9 chr12:51322200-51326400 Weak transcription Hela-S3 cervix
10 chr12:51322200-51326600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr12:51322200-51327200 Weak transcription Fetal Heart heart
12 chr12:51322200-51327200 Weak transcription NHDF-Ad bronchial
13 chr12:51322200-51327400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr12:51322200-51327400 Weak transcription HSMMtube muscle
15 chr12:51322200-51332600 Weak transcription Fetal Kidney kidney
16 chr12:51322400-51327200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr12:51322400-51327200 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr12:51322400-51327200 Weak transcription Esophagus oesophagus
19 chr12:51322400-51327600 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr12:51322400-51327800 Weak transcription H9 Cell Line embryonic stem cell
21 chr12:51322400-51329000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr12:51322600-51326400 Weak transcription Primary neutrophils fromperipheralblood blood
23 chr12:51322600-51326600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr12:51322600-51326600 Weak transcription HMEC breast
25 chr12:51322600-51326800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr12:51322600-51327200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr12:51322800-51326800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr12:51322800-51327600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr12:51322800-51328200 Weak transcription NHEK skin
30 chr12:51322800-51331800 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr12:51323000-51325400 Weak transcription Colonic Mucosa Colon
32 chr12:51323000-51327200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr12:51323000-51327200 Weak transcription Right Atrium heart
34 chr12:51323000-51327800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr12:51323000-51331000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr12:51323000-51377200 Weak transcription Aorta Aorta
37 chr12:51323200-51325600 Weak transcription Small Intestine intestine
38 chr12:51323200-51325800 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr12:51323200-51328000 Weak transcription NHLF lung
40 chr12:51323400-51325600 Strong transcription Primary monocytes fromperipheralblood blood
41 chr12:51323400-51325600 Weak transcription Primary hematopoietic stem cells blood
42 chr12:51323400-51325800 Strong transcription Fetal Adrenal Gland Adrenal Gland
43 chr12:51323400-51326200 Genic enhancers HepG2 liver
44 chr12:51323400-51327200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr12:51323400-51327200 Weak transcription Brain Inferior Temporal Lobe brain
46 chr12:51323400-51327600 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr12:51323400-51327600 Weak transcription Brain Cingulate Gyrus brain
48 chr12:51323400-51330000 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr12:51323400-51330800 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr12:51323400-51330800 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015