Variant report

Variant	rs324104
Chromosome Location	chr19:52954507-52954508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52954462-52954512	IMR90	lung:	fetal
2	chr19:52954462-52954512	CMK	blood:	n/a
3	chr19:52954462-52954512	HEEpiC	esophagus:	n/a
4	chr19:52954462-52954512	PFSK-1	brain:	n/a
5	chr19:52954462-52954512	ECC-1	luminal epithelium:	n/a
6	chr19:52954462-52954512	HEK293	kidney:	embryo
7	chr19:52954462-52954512	HCM	heart:	n/a
8	chr19:52954462-52954512	BJ	skin:	n/a
9	chr19:52954462-52954512	AoSMC	blood vessel:	n/a
10	chr19:52954462-52954512	HPAEpiC	pulmonary alveolar:	n/a
11	chr19:52954462-52954512	Jurkat	blood:	n/a
12	chr19:52954462-52954512	MCF-7	breast:	n/a
13	chr19:52954462-52954512	HCF	heart:	n/a
14	chr19:52954462-52954512	GM12892	blood:	n/a
15	chr19:52954462-52954512	HRPEpiC	eye:	n/a
16	chr19:52954462-52954512	HRCEpiC	kidney:	n/a
17	chr19:52954462-52954512	GM12878	blood:	n/a
18	chr19:52954462-52954512	SK-N-SH_RA	brain:	n/a
19	chr19:52954462-52954512	HCT-116	colon:	n/a
20	chr19:52954462-52954512	SKMC	muscle:	n/a
21	chr19:52954462-52954512	H1-hESC	embryonic stem cell:	embryo
22	chr19:52954462-52954512	U87	brain:	n/a
23	chr19:52954462-52954512	HAEpiC	amniotic membrane:	n/a
24	chr19:52954462-52954512	K562	blood:	n/a
25	chr19:52954462-52954512	SK-N-SH	brain:	n/a
26	chr19:52954462-52954512	AG10803	skin:	n/a
27	chr19:52954462-52954512	NB4	blood:	n/a
28	chr19:52954462-52954512	SK-N-MC	brain:	n/a
29	chr19:52954462-52954512	NHDF-neo	bronchial:	n/a
30	chr19:52954462-52954512	HepG2	liver:	n/a
31	chr19:52954462-52954512	NT2-D1	testis:	n/a
32	chr19:52954462-52954512	AG09319	gingival:	n/a
33	chr19:52954462-52954512	NH-A	brain:	n/a
34	chr19:52954462-52954512	MCF10A-Er-Src	breast:	n/a
35	chr19:52954462-52954512	ProgFib	skin:	n/a
36	chr19:52954462-52954512	GM19239	blood:	n/a
37	chr19:52954462-52954512	ovcar-3	ovarian:	n/a
38	chr19:52954462-52954512	HL-60	blood:	n/a
39	chr19:52954462-52954512	HRE	kidney:	n/a
40	chr19:52954462-52954512	GM06990	blood:	n/a
41	chr19:52954462-52954512	HIPEpiC	eye:	n/a
42	chr19:52954462-52954512	BE2_C	brain:	n/a
43	chr19:52954462-52954512	GM12891	blood:	n/a
44	chr19:52954462-52954512	HMEC	breast:	n/a
45	chr19:52954462-52954512	Hela-S3	cervix:	n/a
46	chr19:52954462-52954512	AG04449	skin:	fetal
47	chr19:52954462-52954512	T-47D	breast:	n/a
48	chr19:52954462-52954512	LNCaP	prostate:	n/a
49	chr19:52954462-52954512	PrEC	prostate:	n/a
50	chr19:52954462-52954512	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
ZNF578	CpG island

Extended variants
information (count: 183 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10408608	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10410134	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853848	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10853849	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084159	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084160	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084161	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084162	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11084163	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1112889	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1115659	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1115660	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11879152	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12459176	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12460429	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1366257	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366258	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1366259	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379639	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1428177	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1428178	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1428179	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1428180	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457854	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1457855	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1457856	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1457857	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1457858	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1465558	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1465559	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1582914	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1617840	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1651527	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1651532	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1651533	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1651534	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1651535	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1651536	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1651537	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1651538	0.82[EUR][1000 genomes]
rs1673892	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1673893	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1673894	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1673900	0.85[EUR][1000 genomes]
rs1673901	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1673902	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1673903	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673904	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673905	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673906	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673907	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673908	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673909	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673910	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1673911	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1673912	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673913	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673914	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1673915	0.89[ASN][1000 genomes]
rs1817266	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1840997	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1840998	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1864019	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1896640	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1896641	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1896642	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1896644	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042912	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2099053	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115101	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2115103	0.88[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168792	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168794	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2434459	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2434461	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446078	0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446079	0.90[ASN][1000 genomes]
rs2560997	0.92[ASN][1000 genomes]
rs2560998	0.84[ASN][1000 genomes]
rs2560999	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2561000	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2561002	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561003	0.95[ASN][1000 genomes]
rs2561005	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561006	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561007	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561008	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561009	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561010	0.86[ASN][1000 genomes]
rs2561011	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561012	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561013	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561014	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561016	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2561017	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2561018	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs2561023	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2561024	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2561025	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2561026	0.99[ASN][1000 genomes]
rs2561027	0.95[ASN][1000 genomes]
rs2561028	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608487	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608488	0.89[CHB][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608489	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608491	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608492	0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608493	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608494	0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608495	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2608496	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2608497	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608498	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608499	0.98[ASN][1000 genomes]
rs2608500	0.87[ASN][1000 genomes]
rs2608501	0.88[ASN][1000 genomes]
rs2608502	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608504	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2608505	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608506	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608536	0.99[ASN][1000 genomes]
rs2608537	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608541	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608542	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2608543	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap]
rs28451504	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903895	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324092	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324096	0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs324103	1.00[ASW][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs324106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324107	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324113	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324114	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324115	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324116	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324117	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324118	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35170850	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4340424	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4404182	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4553728	0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4801916	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4802939	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802944	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802945	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802949	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4802950	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802951	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4802952	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4802953	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509636	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6509637	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6509638	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6509641	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509643	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7246597	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7247031	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7247289	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72483966	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7252655	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8102815	0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8106806	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs8110808	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8110920	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8182524	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8182529	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8182531	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8182532	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8182563	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs970555	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs970556	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979156	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979157	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979158	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs979159	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066537	chr19:52794424-53044977	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv544060	chr19:52794424-53044977	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2762048	chr19:52895166-52997571	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv580026	chr19:52937100-53059872	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1063648	chr19:52938131-53041119	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3415774	chr19:52938189-52970794	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs324104	ZNF578	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52953600-52956400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:52954000-52955000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:52954000-52956400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:52954000-52961600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr19:52954400-52955000	ZNF genes & repeats	Small Intestine	intestine
6	chr19:52954400-52961400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr19:52954400-52962600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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