Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15190871..15191745-chr5:15994067..15994917,2	MCF-7	breast:
2	chr5:15993011..15995112-chr5:15996938..15999410,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11133826	0.83[AMR][1000 genomes]
rs12655516	0.85[AMR][1000 genomes]
rs168747	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs181833	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs250489	0.84[ASN][1000 genomes]
rs250490	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs250496	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs250497	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs250498	0.96[ASN][1000 genomes]
rs250500	0.96[ASN][1000 genomes]
rs250503	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs250504	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2599492	0.93[ASN][1000 genomes]
rs2599503	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs32826	0.96[ASN][1000 genomes]
rs32829	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs32830	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4701645	0.81[AMR][1000 genomes]
rs4701646	0.81[AMR][1000 genomes]
rs4702120	0.85[AMR][1000 genomes]
rs6859383	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15992800-15995800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:15992800-15996000	Enhancers	Fetal Heart	heart
3	chr5:15993000-15994800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:15993400-15995400	Weak transcription	Liver	Liver
5	chr5:15993600-15995600	Enhancers	HUVEC	blood vessel
6	chr5:15994200-15995200	Weak transcription	NH-A	brain
7	chr5:15994400-15995400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:15994400-15995400	Weak transcription	NHEK	skin

Quick Search: