Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15993011..15995112-chr5:15996938..15999410,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10051749	0.89[ASN][1000 genomes]
rs10055882	0.82[ASN][1000 genomes]
rs10076986	0.89[ASN][1000 genomes]
rs11133826	0.89[ASN][1000 genomes]
rs12655516	0.90[ASN][1000 genomes]
rs1502027	0.89[ASN][1000 genomes]
rs168747	0.91[ASN][1000 genomes]
rs181833	0.86[ASN][1000 genomes]
rs250489	0.88[ASN][1000 genomes]
rs250490	0.81[ASN][1000 genomes]
rs250496	0.86[ASN][1000 genomes]
rs250497	0.86[ASN][1000 genomes]
rs250501	0.96[ASN][1000 genomes]
rs250503	0.91[ASN][1000 genomes]
rs250504	0.91[ASN][1000 genomes]
rs250505	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2599492	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2599503	0.91[ASN][1000 genomes]
rs32825	0.96[ASN][1000 genomes]
rs32826	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs32827	0.92[ASN][1000 genomes]
rs32828	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs32829	0.91[ASN][1000 genomes]
rs32830	0.91[ASN][1000 genomes]
rs4701645	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4701646	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4702120	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15992600-15994400	Enhancers	NHEK	skin
2	chr5:15992800-15994000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:15992800-15994200	Enhancers	HMEC	breast
4	chr5:15992800-15995800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:15992800-15996000	Enhancers	Fetal Heart	heart
6	chr5:15993000-15993600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:15993000-15993600	Enhancers	HSMM	muscle
8	chr5:15993000-15993800	Enhancers	A549	lung
9	chr5:15993000-15994000	Enhancers	NHDF-Ad	bronchial
10	chr5:15993000-15994000	Enhancers	Osteobl	bone
11	chr5:15993000-15994200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:15993000-15994200	Enhancers	NH-A	brain
13	chr5:15993000-15994400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:15993000-15994400	Enhancers	NHLF	lung
15	chr5:15993000-15994800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:15993200-15993600	Flanking Active TSS	HUVEC	blood vessel
17	chr5:15993200-15993800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:15993200-15993800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:15993400-15993800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:15993400-15995400	Weak transcription	Liver	Liver

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