Variant report

Variant	rs32826
Chromosome Location	chr5:15992984-15992985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs181833	0.82[ASN][1000 genomes]
rs250489	0.83[ASN][1000 genomes]
rs250490	0.99[ASN][1000 genomes]
rs250496	0.82[ASN][1000 genomes]
rs250497	0.82[ASN][1000 genomes]
rs250498	0.96[ASN][1000 genomes]
rs250500	0.96[ASN][1000 genomes]
rs250505	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2599492	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs32823	0.96[ASN][1000 genomes]
rs32824	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs32828	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4701645	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4701646	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15992200-15993200	Enhancers	HUVEC	blood vessel
2	chr5:15992600-15994400	Enhancers	NHEK	skin
3	chr5:15992800-15993400	Enhancers	Liver	Liver
4	chr5:15992800-15994000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:15992800-15994200	Enhancers	HMEC	breast
6	chr5:15992800-15995800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:15992800-15996000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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