Variant report
| Variant | rs331720 |
|---|---|
| Chromosome Location | chr5:124900178-124900179 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10434773 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10434774 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2608114 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2608115 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs330336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs330337 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs330338 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs330341 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs330343 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs330344 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs330350 | 0.88[AMR][1000 genomes] |
| rs330352 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs330353 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs330355 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs330356 | 0.88[AMR][1000 genomes] |
| rs331716 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs331719 | 0.86[ASN][1000 genomes] |
| rs331721 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68142408 | 0.84[AMR][1000 genomes] |
| rs6896312 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030992 | chr5:124708549-125391503 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv537892 | chr5:124708549-125391503 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv882827 | chr5:124867823-124943901 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv882828 | chr5:124867823-124958205 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv4986 | chr5:124899753-124944916 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:124895800-124908400 | Weak transcription | Fetal Heart | heart |
