Variant report

Variant	rs331943
Chromosome Location	chr4:143658496-143658497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10024696	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10519666	0.87[EUR][1000 genomes]
rs10857399	0.85[ASN][1000 genomes]
rs11724017	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11726381	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640389	0.84[ASN][1000 genomes]
rs13117185	0.85[ASN][1000 genomes]
rs1373030	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373031	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1373034	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443183	0.85[ASN][1000 genomes]
rs1443187	0.83[ASN][1000 genomes]
rs1465962	0.85[ASN][1000 genomes]
rs167960	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016768	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17016789	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17732408	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822360	0.85[ASN][1000 genomes]
rs1822361	0.85[ASN][1000 genomes]
rs1822362	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838082	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1867214	0.85[ASN][1000 genomes]
rs1965828	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2165819	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2589994	0.85[ASN][1000 genomes]
rs3113593	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs331939	0.85[ASN][1000 genomes]
rs331940	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs331942	0.85[ASN][1000 genomes]
rs331944	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331945	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs331946	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331947	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331951	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs331952	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331953	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs331954	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331956	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331958	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331959	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331960	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331961	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331962	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331964	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331965	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34831472	0.87[EUR][1000 genomes]
rs4690700	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690725	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690726	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4690727	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56011189	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56332157	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6831562	0.81[EUR][1000 genomes]
rs72728615	0.82[ASN][1000 genomes]
rs72728621	0.83[ASN][1000 genomes]
rs72728641	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72728649	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728651	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72728654	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72728661	0.81[ASN][1000 genomes]
rs72728681	0.87[EUR][1000 genomes]
rs72728686	0.87[EUR][1000 genomes]
rs7666140	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7668552	0.87[EUR][1000 genomes]
rs7668786	0.87[EUR][1000 genomes]
rs7679151	0.87[EUR][1000 genomes]
rs7695461	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143642800-143664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143651000-143664400	Weak transcription	Aorta	Aorta
3	chr4:143653200-143664400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143654400-143659800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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