Variant report

Variant	rs331948
Chromosome Location	chr4:143679854-143679855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143391122..143393717-chr4:143678959..143680972,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10024696	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10857399	0.91[EUR][1000 genomes]
rs11100754	0.95[EUR][1000 genomes]
rs11100760	0.89[EUR][1000 genomes]
rs11933763	0.88[EUR][1000 genomes]
rs12233703	0.85[EUR][1000 genomes]
rs12640389	0.91[EUR][1000 genomes]
rs12644329	0.95[EUR][1000 genomes]
rs13117185	0.91[EUR][1000 genomes]
rs13141925	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13435565	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373031	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1373032	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1443183	0.91[EUR][1000 genomes]
rs1443185	0.95[EUR][1000 genomes]
rs1443186	0.95[EUR][1000 genomes]
rs1465962	0.91[EUR][1000 genomes]
rs17016777	0.91[EUR][1000 genomes]
rs179508	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1822360	0.91[EUR][1000 genomes]
rs1822361	0.91[EUR][1000 genomes]
rs1838082	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1867214	0.91[EUR][1000 genomes]
rs191762	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1961836	0.85[EUR][1000 genomes]
rs1965828	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2165819	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2589994	0.91[EUR][1000 genomes]
rs28420913	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113593	0.82[EUR][1000 genomes]
rs331939	0.91[EUR][1000 genomes]
rs331940	0.90[EUR][1000 genomes]
rs331942	0.91[EUR][1000 genomes]
rs331949	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs331950	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs331951	0.82[EUR][1000 genomes]
rs331957	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs331963	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs331966	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34442253	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4690698	0.81[ASN][1000 genomes]
rs4690699	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4690726	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6537124	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6537127	0.90[EUR][1000 genomes]
rs6813458	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816424	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6819498	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6831927	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6844306	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6845583	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6852570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7376475	0.86[EUR][1000 genomes]
rs7667183	0.91[EUR][1000 genomes]
rs7688275	0.80[EUR][1000 genomes]
rs966457	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143672600-143698400	Weak transcription	Aorta	Aorta
2	chr4:143675400-143683000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143675400-143688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143675600-143683600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143676800-143680200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:143679200-143682000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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