Variant report

Variant	rs331951
Chromosome Location	chr4:143664834-143664835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10024696	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1017527	0.84[JPT][hapmap]
rs1031104	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs10857399	0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11100754	0.84[CEU][hapmap]
rs11724017	0.90[ASN][1000 genomes]
rs11726381	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11933763	0.85[EUR][1000 genomes]
rs11943397	0.81[CHB][hapmap]
rs12233703	0.87[EUR][1000 genomes]
rs12640389	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12650777	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs13117185	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13141925	0.82[EUR][1000 genomes]
rs13149611	0.81[CHD][hapmap]
rs13435565	0.80[EUR][1000 genomes]
rs1373030	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1373031	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1373032	0.81[EUR][1000 genomes]
rs1373034	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1441417	0.90[CHB][hapmap]
rs1443183	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1443187	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443190	0.81[CHD][hapmap]
rs1465962	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs167960	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016768	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17016777	0.89[EUR][1000 genomes]
rs17016789	0.82[ASN][1000 genomes]
rs17732408	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17732791	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs179508	0.83[EUR][1000 genomes]
rs1822360	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822361	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1822362	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1838082	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867214	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1899565	0.81[CHB][hapmap]
rs191762	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1961836	0.87[EUR][1000 genomes]
rs1965828	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1992417	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1992418	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2120158	0.81[CHB][hapmap]
rs2165819	0.84[ASN][1000 genomes]
rs2589994	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28420913	0.80[EUR][1000 genomes]
rs3113593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331939	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs331940	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs331942	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs331943	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs331944	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs331945	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs331946	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331947	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331948	0.82[EUR][1000 genomes]
rs331949	0.83[EUR][1000 genomes]
rs331950	0.83[EUR][1000 genomes]
rs331952	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs331953	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs331954	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331956	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331958	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331959	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331960	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331961	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331962	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331963	0.82[EUR][1000 genomes]
rs331964	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs331965	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34442253	0.81[EUR][1000 genomes]
rs34831472	0.81[AMR][1000 genomes]
rs4690698	0.88[MEX][hapmap];0.83[TSI][hapmap]
rs4690699	0.84[CEU][hapmap];0.88[MEX][hapmap];0.80[EUR][1000 genomes]
rs4690700	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690725	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4690726	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4690727	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56011189	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56332157	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6537124	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6537129	1.00[CHB][hapmap]
rs6819498	0.80[EUR][1000 genomes]
rs6830053	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs6831927	0.80[EUR][1000 genomes]
rs6839158	0.90[CHB][hapmap]
rs6844306	0.80[EUR][1000 genomes]
rs6845583	0.80[EUR][1000 genomes]
rs6852570	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs72728615	0.82[ASN][1000 genomes]
rs72728621	0.83[ASN][1000 genomes]
rs72728641	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72728649	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72728651	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72728654	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72728661	0.81[ASN][1000 genomes]
rs72728681	0.84[AMR][1000 genomes]
rs7376475	0.86[EUR][1000 genomes]
rs7656375	1.00[CHB][hapmap]
rs7663475	1.00[CHB][hapmap]
rs7666140	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7667183	0.89[EUR][1000 genomes]
rs7668552	0.81[AMR][1000 genomes]
rs7668786	0.81[AMR][1000 genomes]
rs7671783	0.84[JPT][hapmap]
rs7675305	0.81[CHD][hapmap]
rs7682731	0.81[CHD][hapmap]
rs7688435	0.81[CHD][hapmap]
rs7695514	0.91[JPT][hapmap]
rs966457	0.82[EUR][1000 genomes]
rs978361	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143663800-143665200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:143664000-143665000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:143664200-143665000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143664200-143665000	Enhancers	Fetal Heart	heart
5	chr4:143664200-143665000	Enhancers	Stomach Mucosa	stomach
6	chr4:143664200-143665000	Enhancers	HUVEC	blood vessel
7	chr4:143664200-143667800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:143664400-143665000	Enhancers	Hela-S3	cervix
9	chr4:143664400-143665000	Enhancers	HMEC	breast
10	chr4:143664400-143665000	Enhancers	NHDF-Ad	bronchial
11	chr4:143664400-143665000	Enhancers	Osteobl	bone
12	chr4:143664600-143665000	Active TSS	Aorta	Aorta

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