Variant report

Variant	rs331957
Chromosome Location	chr4:143668523-143668524
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10024696	0.84[EUR][1000 genomes]
rs10857399	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11100754	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11100760	0.81[EUR][1000 genomes]
rs12640389	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12644329	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13117185	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13141925	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13435565	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373031	0.84[EUR][1000 genomes]
rs1373032	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1443183	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443185	0.89[EUR][1000 genomes]
rs1443186	0.89[EUR][1000 genomes]
rs1465962	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016777	0.83[EUR][1000 genomes]
rs179508	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1822360	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1822361	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1838082	0.84[EUR][1000 genomes]
rs1867214	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs191762	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1965828	0.84[EUR][1000 genomes]
rs2589994	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28420913	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs331939	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs331940	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs331942	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs331948	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs331949	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs331950	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs331953	0.83[ASN][1000 genomes]
rs331963	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs331966	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34442253	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4690699	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4690726	0.84[EUR][1000 genomes]
rs6537124	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6537127	0.83[EUR][1000 genomes]
rs6813458	0.88[EUR][1000 genomes]
rs6816424	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6819498	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6831927	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6844306	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6845583	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6852570	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7667183	0.83[EUR][1000 genomes]
rs966457	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143668000-143671800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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