Variant report

Variant	rs335684
Chromosome Location	chr15:76194304-76194305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:76194303-76194980	K562	blood:	n/a	n/a
2	SP1	chr15:76194234-76195010	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr15:76194284-76197130	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr15:76193185-76197025	K562	blood:	n/a	n/a
5	TEAD4	chr15:76194281-76194991	K562	blood:	n/a	n/a
6	RCOR1	chr15:76194303-76195351	K562	blood:	n/a	n/a
7	NR2F2	chr15:76194240-76195002	K562	blood:	n/a	n/a
8	POLR2A	chr15:76194080-76194686	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76135404..76137728-chr15:76192925..76195968,4	K562	blood:
2	chr15:75109652..75112640-chr15:76193633..76196409,2	K562	blood:
3	chr15:76190464..76192251-chr15:76192564..76194380,2	K562	blood:
4	chr15:76134186..76138083-chr15:76192925..76200499,13	K562	blood:
5	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:
6	chr15:76159419..76162201-chr15:76192525..76194539,2	K562	blood:

No data

Variant related genes	Relation type
FBXO22	TF binding region
ENSG00000140506	Chromatin interaction
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 176 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13379955	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394122	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1498196	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1503955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1532783	1.00[EUR][1000 genomes]
rs1562403	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1695365	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16967747	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs170830	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1874955	1.00[EUR][1000 genomes]
rs1874956	1.00[EUR][1000 genomes]
rs1910510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1976328	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133099	1.00[EUR][1000 genomes]
rs2133408	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2133409	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2133410	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2405578	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2441928	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454209	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454210	1.00[CEU][hapmap]
rs2454212	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2454470	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2455897	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2460795	1.00[EUR][1000 genomes]
rs2460796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2460801	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469038	1.00[EUR][1000 genomes]
rs2469040	1.00[EUR][1000 genomes]
rs2593275	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593281	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593302	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2604403	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2604405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2648435	1.00[CEU][hapmap];0.86[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs2648437	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655126	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655137	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2955772	0.84[ASW][hapmap]
rs2959851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[EUR][1000 genomes]
rs334940	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs334941	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334951	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335673	1.00[EUR][1000 genomes]
rs335674	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335675	0.93[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335676	0.85[EUR][1000 genomes]
rs335678	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335679	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335687	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335693	0.85[EUR][1000 genomes]
rs335694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335701	1.00[EUR][1000 genomes]
rs335710	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335713	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335724	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335726	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335728	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335729	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs335730	1.00[EUR][1000 genomes]
rs335731	1.00[EUR][1000 genomes]
rs335732	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335733	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	1.00[EUR][1000 genomes]
rs55719276	1.00[EUR][1000 genomes]
rs55782145	1.00[EUR][1000 genomes]
rs55828994	1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	1.00[EUR][1000 genomes]
rs56218266	1.00[EUR][1000 genomes]
rs57011816	1.00[EUR][1000 genomes]
rs57127155	1.00[EUR][1000 genomes]
rs57141410	1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	1.00[EUR][1000 genomes]
rs57971067	1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	1.00[EUR][1000 genomes]
rs58170668	0.92[EUR][1000 genomes]
rs58399164	1.00[EUR][1000 genomes]
rs58717562	1.00[EUR][1000 genomes]
rs58789594	1.00[EUR][1000 genomes]
rs59143042	1.00[EUR][1000 genomes]
rs59690620	1.00[EUR][1000 genomes]
rs59819402	1.00[EUR][1000 genomes]
rs59839117	1.00[EUR][1000 genomes]
rs60088262	1.00[EUR][1000 genomes]
rs60155009	1.00[EUR][1000 genomes]
rs60191258	1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[EUR][1000 genomes]
rs61521312	1.00[EUR][1000 genomes]
rs62027568	1.00[EUR][1000 genomes]
rs7168988	1.00[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7174280	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7174365	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175758	1.00[EUR][1000 genomes]
rs7177048	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7182720	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74024005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024006	1.00[EUR][1000 genomes]
rs74024007	1.00[EUR][1000 genomes]
rs74024009	1.00[EUR][1000 genomes]
rs74024011	1.00[EUR][1000 genomes]
rs74024014	1.00[EUR][1000 genomes]
rs74024015	1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	1.00[EUR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	0.83[EUR][1000 genomes]
rs74024022	1.00[EUR][1000 genomes]
rs74024023	1.00[EUR][1000 genomes]
rs74024028	1.00[EUR][1000 genomes]
rs74024029	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024030	1.00[EUR][1000 genomes]
rs74024032	1.00[EUR][1000 genomes]
rs74024035	1.00[EUR][1000 genomes]
rs74024038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024039	1.00[EUR][1000 genomes]
rs74024040	1.00[EUR][1000 genomes]
rs74024041	1.00[EUR][1000 genomes]
rs74024042	1.00[EUR][1000 genomes]
rs74024043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024044	1.00[EUR][1000 genomes]
rs74024045	1.00[EUR][1000 genomes]
rs74024047	1.00[EUR][1000 genomes]
rs74024048	1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	1.00[EUR][1000 genomes]
rs74024052	1.00[EUR][1000 genomes]
rs74024053	1.00[EUR][1000 genomes]
rs74024059	1.00[EUR][1000 genomes]
rs74024060	1.00[EUR][1000 genomes]
rs74024063	1.00[EUR][1000 genomes]
rs74024064	1.00[EUR][1000 genomes]
rs74024065	1.00[EUR][1000 genomes]
rs74024071	1.00[EUR][1000 genomes]
rs74024073	1.00[EUR][1000 genomes]
rs8025372	1.00[EUR][1000 genomes]
rs8028084	1.00[EUR][1000 genomes]
rs8028766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030102	1.00[CEU][hapmap]
rs8030469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8030948	0.85[EUR][1000 genomes]
rs8031263	1.00[EUR][1000 genomes]
rs8033005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8034430	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8035611	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8036952	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038729	0.92[EUR][1000 genomes]
rs9672219	1.00[EUR][1000 genomes]
rs974718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs335684	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
6	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:76166400-76194600	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:76166400-76195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:76166400-76195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:76166400-76195800	Weak transcription	Gastric	stomach
12	chr15:76166600-76194400	Weak transcription	Right Ventricle	heart
13	chr15:76166600-76195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:76166600-76195400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:76166600-76195800	Weak transcription	Aorta	Aorta
16	chr15:76166800-76195400	Weak transcription	Fetal Intestine Small	intestine
17	chr15:76167000-76194400	Weak transcription	Spleen	Spleen
18	chr15:76167000-76195600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:76167000-76195800	Weak transcription	Esophagus	oesophagus
20	chr15:76167200-76195200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:76167200-76195600	Weak transcription	Lung	lung
22	chr15:76167600-76195400	Weak transcription	Brain Angular Gyrus	brain
23	chr15:76168200-76195000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:76172000-76195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:76172200-76194600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:76172200-76195600	Weak transcription	Fetal Intestine Large	intestine
27	chr15:76172400-76195200	Weak transcription	Left Ventricle	heart
28	chr15:76172400-76195600	Weak transcription	Ovary	ovary
29	chr15:76176600-76195400	Weak transcription	Fetal Brain Male	brain
30	chr15:76177000-76195200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:76177800-76194600	Weak transcription	Thymus	Thymus
32	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:76180000-76195800	Weak transcription	Small Intestine	intestine
35	chr15:76180200-76195200	Weak transcription	Pancreas	Pancrea
36	chr15:76184400-76194400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:76184400-76194400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:76184400-76195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:76184400-76195200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:76184400-76195200	Weak transcription	A549	lung
41	chr15:76184400-76195200	Weak transcription	GM12878-XiMat	blood
42	chr15:76184400-76195600	Weak transcription	Psoas Muscle	Psoas
43	chr15:76184400-76195600	Weak transcription	Right Atrium	heart
44	chr15:76184600-76194400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:76184600-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:76184600-76195200	Weak transcription	HMEC	breast
47	chr15:76184600-76195400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:76184600-76195400	Weak transcription	Fetal Kidney	kidney
49	chr15:76184800-76194400	Weak transcription	NHEK	skin
50	chr15:76184800-76194600	Weak transcription	Hela-S3	cervix

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