Variant report

Variant	rs335687
Chromosome Location	chr15:76191966-76191967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:76191784-76192086	K562	blood:	n/a	n/a
2	TAL1	chr15:76191841-76192237	K562	blood:	n/a	n/a
3	RFX5	chr15:76191791-76191976	K562	blood:	n/a	n/a
4	EP300	chr15:76191899-76192167	K562	blood:	n/a	n/a
5	TBL1XR1	chr15:76191933-76192376	K562	blood:	n/a	n/a
6	GATA1	chr15:76191761-76192235	PBDE	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76185756..76188728-chr15:76191181..76193315,3	K562	blood:
2	chr15:76190676..76192900-chr15:76194789..76197660,2	K562	blood:
3	chr15:76133759..76137601-chr15:76188038..76192519,6	MCF-7	breast:
4	chr15:76172140..76173726-chr15:76190958..76192961,2	K562	blood:
5	chr15:76135100..76137352-chr15:76191010..76193269,2	MCF-7	breast:
6	chr15:76188987..76192900-chr15:76194708..76196784,3	K562	blood:
7	chr15:76190464..76192251-chr15:76192564..76194380,2	K562	blood:

No data

Variant related genes	Relation type
FBXO22	TF binding region
ENSG00000167196	Chromatin interaction
ENSG00000266308	Chromatin interaction
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 177 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10468062	0.84[AFR][1000 genomes]
rs13379955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1394122	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1498196	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1503955	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562403	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1695365	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16967747	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170830	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910510	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976328	1.00[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133408	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2133410	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405578	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441928	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454210	1.00[CEU][hapmap]
rs2454212	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs2454470	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2455897	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460796	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460799	0.91[AFR][1000 genomes]
rs2460801	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593275	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2593281	1.00[EUR][1000 genomes]
rs2593302	1.00[EUR][1000 genomes]
rs2604405	1.00[EUR][1000 genomes]
rs2648435	1.00[CEU][hapmap]
rs2648437	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2655126	1.00[EUR][1000 genomes]
rs2655137	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2947239	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2959851	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334940	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334951	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335674	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335675	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs335676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335678	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs335679	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335683	1.00[EUR][1000 genomes]
rs335684	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335693	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335694	1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[EUR][1000 genomes]
rs335701	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335710	0.85[EUR][1000 genomes]
rs335713	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335717	1.00[EUR][1000 genomes]
rs335724	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335725	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335726	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335728	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335729	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335732	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335733	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55665712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55782145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57011816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57127155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58399164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58789594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59143042	1.00[EUR][1000 genomes]
rs59690620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59819402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59839117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62027568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174280	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174365	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177048	1.00[CEU][hapmap]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182720	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024005	1.00[EUR][1000 genomes]
rs74024006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024011	1.00[EUR][1000 genomes]
rs74024014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024015	1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	1.00[EUR][1000 genomes]
rs74024019	1.00[AMR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024029	1.00[EUR][1000 genomes]
rs74024030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024038	1.00[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024043	1.00[EUR][1000 genomes]
rs74024044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028766	1.00[EUR][1000 genomes]
rs8030102	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8030469	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030948	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033005	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034430	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035611	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036952	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8038729	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9672219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974718	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs335687	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
6	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:76166400-76193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:76166400-76194600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:76166400-76195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:76166400-76195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:76166400-76195800	Weak transcription	Gastric	stomach
14	chr15:76166600-76194400	Weak transcription	Right Ventricle	heart
15	chr15:76166600-76195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:76166600-76195400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:76166600-76195800	Weak transcription	Aorta	Aorta
18	chr15:76166800-76195400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:76167000-76194400	Weak transcription	Spleen	Spleen
20	chr15:76167000-76195600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:76167000-76195800	Weak transcription	Esophagus	oesophagus
22	chr15:76167200-76193800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:76167200-76195200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:76167200-76195600	Weak transcription	Lung	lung
25	chr15:76167600-76195400	Weak transcription	Brain Angular Gyrus	brain
26	chr15:76168200-76195000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:76172000-76195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:76172200-76192400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:76172200-76194600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:76172200-76195600	Weak transcription	Fetal Intestine Large	intestine
31	chr15:76172400-76193000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:76172400-76193600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:76172400-76193600	Weak transcription	Brain Germinal Matrix	brain
34	chr15:76172400-76195200	Weak transcription	Left Ventricle	heart
35	chr15:76172400-76195600	Weak transcription	Ovary	ovary
36	chr15:76176600-76195400	Weak transcription	Fetal Brain Male	brain
37	chr15:76177000-76195200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr15:76177800-76194600	Weak transcription	Thymus	Thymus
39	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:76178200-76195200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:76179200-76193800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:76180000-76195800	Weak transcription	Small Intestine	intestine
43	chr15:76180200-76195200	Weak transcription	Pancreas	Pancrea
44	chr15:76180800-76194200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:76181400-76192400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:76184400-76192800	Weak transcription	HepG2	liver
47	chr15:76184400-76194200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:76184400-76194400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:76184400-76194400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:76184400-76195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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