Variant report

Variant	rs335693
Chromosome Location	chr15:76213924-76213925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76102059..76103151-chr15:76213899..76214766,4	MCF-7	breast:
2	chr15:76100272..76101901-chr15:76213487..76215015,2	MCF-7	breast:
3	chr15:76134738..76137531-chr15:76213664..76217396,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 171 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1039547	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13379955	0.85[EUR][1000 genomes]
rs1394122	0.85[EUR][1000 genomes]
rs1498196	0.85[EUR][1000 genomes]
rs1498197	0.85[EUR][1000 genomes]
rs1498198	0.85[EUR][1000 genomes]
rs1503955	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1532783	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1562403	0.85[EUR][1000 genomes]
rs1695365	0.85[EUR][1000 genomes]
rs16967747	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs170830	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1910510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1976328	0.85[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2133408	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2133409	0.85[EUR][1000 genomes]
rs2133410	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2405578	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2441928	0.85[EUR][1000 genomes]
rs2454209	0.85[EUR][1000 genomes]
rs2454212	0.85[EUR][1000 genomes]
rs2454470	0.85[EUR][1000 genomes]
rs2454472	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2455897	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2460796	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2460801	0.85[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2593275	0.85[EUR][1000 genomes]
rs2593281	0.85[EUR][1000 genomes]
rs2593302	0.85[EUR][1000 genomes]
rs2604405	0.85[EUR][1000 genomes]
rs2648435	1.00[AFR][1000 genomes]
rs2648437	0.85[EUR][1000 genomes]
rs2655126	0.85[EUR][1000 genomes]
rs2655137	0.85[EUR][1000 genomes]
rs2947239	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2959851	0.85[EUR][1000 genomes]
rs334923	0.85[EUR][1000 genomes]
rs334937	0.85[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs334940	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs334941	0.85[EUR][1000 genomes]
rs334951	0.85[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335674	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335676	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs335678	0.85[EUR][1000 genomes]
rs335679	0.85[EUR][1000 genomes]
rs335683	0.85[EUR][1000 genomes]
rs335684	0.85[EUR][1000 genomes]
rs335687	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335694	0.85[EUR][1000 genomes]
rs335695	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs335700	0.85[EUR][1000 genomes]
rs335701	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335713	0.85[EUR][1000 genomes]
rs335717	0.85[EUR][1000 genomes]
rs335724	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335725	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335726	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335728	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335729	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335732	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335733	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4482249	0.85[EUR][1000 genomes]
rs4489969	0.85[EUR][1000 genomes]
rs55665712	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55719276	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55782145	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55828994	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56139080	0.85[EUR][1000 genomes]
rs56167836	0.85[EUR][1000 genomes]
rs56173902	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57011816	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57127155	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57429900	0.85[EUR][1000 genomes]
rs57737646	0.85[EUR][1000 genomes]
rs57968453	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57973358	0.85[EUR][1000 genomes]
rs58044283	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes]
rs58399164	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58789594	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59143042	0.85[EUR][1000 genomes]
rs59690620	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59819402	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59839117	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60088262	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60155009	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60191258	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60817295	0.85[EUR][1000 genomes]
rs60846313	0.85[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61521312	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62027568	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7173697	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7174280	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7174365	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7175758	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7180064	0.85[EUR][1000 genomes]
rs7181550	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7182720	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024005	0.85[EUR][1000 genomes]
rs74024006	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024007	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024009	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024011	0.85[EUR][1000 genomes]
rs74024014	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024015	0.85[EUR][1000 genomes]
rs74024016	0.85[EUR][1000 genomes]
rs74024017	0.85[EUR][1000 genomes]
rs74024019	1.00[AMR][1000 genomes]
rs74024020	0.85[EUR][1000 genomes]
rs74024021	1.00[AMR][1000 genomes]
rs74024022	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024023	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024028	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024029	0.85[EUR][1000 genomes]
rs74024030	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024032	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024035	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024038	0.85[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024040	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024041	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024042	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024043	0.85[EUR][1000 genomes]
rs74024044	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024045	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024047	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024048	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024049	0.85[EUR][1000 genomes]
rs74024051	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024052	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024053	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024059	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024060	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8025372	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8028766	0.85[EUR][1000 genomes]
rs8030469	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8030948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8033005	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8034430	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8035611	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8036952	0.85[EUR][1000 genomes]
rs8038729	1.00[AMR][1000 genomes]
rs9672219	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs974718	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs335693	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
2	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:76197800-76214400	Weak transcription	Stomach Mucosa	stomach
5	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:76198000-76214400	Weak transcription	Esophagus	oesophagus
7	chr15:76198000-76214400	Weak transcription	Pancreas	Pancrea
8	chr15:76198000-76214600	Weak transcription	Right Ventricle	heart
9	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:76198400-76214200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
13	chr15:76198600-76217000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
15	chr15:76199000-76215800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:76201200-76214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:76203800-76230200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:76205400-76214200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:76205400-76215400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:76205400-76217200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:76205400-76217200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:76205400-76218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:76205600-76216200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:76205600-76216400	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr15:76205800-76216800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:76206800-76218800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr15:76207000-76226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:76207000-76228200	Weak transcription	Brain Substantia Nigra	brain
29	chr15:76207000-76228200	Weak transcription	Colonic Mucosa	Colon
30	chr15:76207000-76232000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:76207200-76214400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:76207200-76214400	Weak transcription	Ovary	ovary
33	chr15:76207200-76225000	Weak transcription	Spleen	Spleen
34	chr15:76207200-76226600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:76207400-76214400	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:76207400-76214400	Weak transcription	Lung	lung
37	chr15:76207400-76214400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:76207400-76216800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:76207400-76218000	Weak transcription	Brain Germinal Matrix	brain
40	chr15:76207400-76222200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:76207400-76222200	Weak transcription	Brain Angular Gyrus	brain
42	chr15:76207400-76223000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:76208000-76222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr15:76208400-76214800	Strong transcription	Primary B cells from cord blood	blood
45	chr15:76208400-76232800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:76209000-76214200	Weak transcription	Thymus	Thymus
47	chr15:76209000-76214400	Weak transcription	NHLF	lung
48	chr15:76209000-76216600	Weak transcription	Fetal Brain Female	brain
49	chr15:76209000-76225000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:76209000-76225000	Weak transcription	Stomach Smooth Muscle	stomach

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