Variant report

Variant	rs335717
Chromosome Location	chr15:76181522-76181523
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76167386..76170253-chr15:76181012..76182661,2	K562	blood:
2	chr15:76179685..76181538-chr15:76200237..76202606,2	K562	blood:

Extended variants
information (count: 176 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs1039547	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13379955	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1394122	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1498196	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1503955	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1532783	1.00[EUR][1000 genomes]
rs1562403	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1695365	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16967747	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs170830	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1874955	1.00[EUR][1000 genomes]
rs1874956	1.00[EUR][1000 genomes]
rs1910510	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1976328	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133099	1.00[EUR][1000 genomes]
rs2133408	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2133409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2133410	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2405578	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2441928	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454209	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454210	1.00[CEU][hapmap]
rs2454212	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2454470	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2454472	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2455897	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2460795	1.00[EUR][1000 genomes]
rs2460796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2460801	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469038	1.00[EUR][1000 genomes]
rs2469040	1.00[EUR][1000 genomes]
rs2593275	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2604403	1.00[AMR][1000 genomes]
rs2604405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2648435	1.00[CEU][hapmap]
rs2648437	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2655137	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2947239	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2959851	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[EUR][1000 genomes]
rs334940	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs334941	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334951	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335673	1.00[EUR][1000 genomes]
rs335674	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335675	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335676	0.85[EUR][1000 genomes]
rs335678	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335679	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335684	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335687	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335693	0.85[EUR][1000 genomes]
rs335694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335701	1.00[EUR][1000 genomes]
rs335710	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335713	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335724	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335726	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335728	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335729	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335730	1.00[EUR][1000 genomes]
rs335731	1.00[EUR][1000 genomes]
rs335732	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs335733	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	1.00[EUR][1000 genomes]
rs55719276	1.00[EUR][1000 genomes]
rs55782145	1.00[EUR][1000 genomes]
rs55828994	1.00[EUR][1000 genomes]
rs56139080	1.00[EUR][1000 genomes]
rs56167836	1.00[EUR][1000 genomes]
rs56173902	1.00[EUR][1000 genomes]
rs56218266	1.00[EUR][1000 genomes]
rs57011816	1.00[EUR][1000 genomes]
rs57127155	1.00[EUR][1000 genomes]
rs57141410	1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	1.00[EUR][1000 genomes]
rs57971067	1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	1.00[EUR][1000 genomes]
rs58170668	0.92[EUR][1000 genomes]
rs58399164	1.00[EUR][1000 genomes]
rs58717562	1.00[EUR][1000 genomes]
rs58789594	1.00[EUR][1000 genomes]
rs59143042	1.00[EUR][1000 genomes]
rs59690620	1.00[EUR][1000 genomes]
rs59819402	1.00[EUR][1000 genomes]
rs59839117	1.00[EUR][1000 genomes]
rs60088262	1.00[EUR][1000 genomes]
rs60155009	1.00[EUR][1000 genomes]
rs60191258	1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	1.00[EUR][1000 genomes]
rs61240117	1.00[EUR][1000 genomes]
rs61521312	1.00[EUR][1000 genomes]
rs62027568	1.00[EUR][1000 genomes]
rs7168988	1.00[EUR][1000 genomes]
rs7173697	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7174280	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7174365	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175758	1.00[EUR][1000 genomes]
rs7177048	1.00[CEU][hapmap]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7182720	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74024005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024006	1.00[EUR][1000 genomes]
rs74024007	1.00[EUR][1000 genomes]
rs74024009	1.00[EUR][1000 genomes]
rs74024011	1.00[EUR][1000 genomes]
rs74024014	1.00[EUR][1000 genomes]
rs74024015	1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	1.00[EUR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	0.83[EUR][1000 genomes]
rs74024022	1.00[EUR][1000 genomes]
rs74024023	1.00[EUR][1000 genomes]
rs74024028	1.00[EUR][1000 genomes]
rs74024029	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024030	1.00[EUR][1000 genomes]
rs74024032	1.00[EUR][1000 genomes]
rs74024035	1.00[EUR][1000 genomes]
rs74024038	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024039	1.00[EUR][1000 genomes]
rs74024040	1.00[EUR][1000 genomes]
rs74024041	1.00[EUR][1000 genomes]
rs74024042	1.00[EUR][1000 genomes]
rs74024043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024044	1.00[EUR][1000 genomes]
rs74024045	1.00[EUR][1000 genomes]
rs74024047	1.00[EUR][1000 genomes]
rs74024048	1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	1.00[EUR][1000 genomes]
rs74024052	1.00[EUR][1000 genomes]
rs74024053	1.00[EUR][1000 genomes]
rs74024059	1.00[EUR][1000 genomes]
rs74024060	1.00[EUR][1000 genomes]
rs74024063	1.00[EUR][1000 genomes]
rs74024064	1.00[EUR][1000 genomes]
rs74024065	1.00[EUR][1000 genomes]
rs74024071	1.00[EUR][1000 genomes]
rs74024073	1.00[EUR][1000 genomes]
rs8025372	1.00[EUR][1000 genomes]
rs8028084	1.00[EUR][1000 genomes]
rs8028766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030102	1.00[CEU][hapmap]
rs8030469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8030948	0.85[EUR][1000 genomes]
rs8031263	1.00[EUR][1000 genomes]
rs8033005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8034430	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8035611	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8036952	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038729	0.92[EUR][1000 genomes]
rs9672219	1.00[EUR][1000 genomes]
rs974718	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv976953	chr15:76179499-76184299	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs335717	FBXO22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
2	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
3	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
7	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
10	chr15:76152800-76193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:76159800-76195400	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:76161000-76182200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:76161800-76182000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:76162000-76184000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:76164200-76182400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:76165400-76188800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:76165600-76185800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:76165600-76194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:76165800-76186600	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:76166200-76186600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr15:76166400-76193600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:76166400-76194600	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:76166400-76195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:76166400-76195400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:76166400-76195800	Weak transcription	Gastric	stomach
26	chr15:76166600-76194400	Weak transcription	Right Ventricle	heart
27	chr15:76166600-76195200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:76166600-76195400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:76166600-76195800	Weak transcription	Aorta	Aorta
30	chr15:76166800-76184200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:76166800-76195400	Weak transcription	Fetal Intestine Small	intestine
32	chr15:76167000-76194400	Weak transcription	Spleen	Spleen
33	chr15:76167000-76195600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:76167000-76195800	Weak transcription	Esophagus	oesophagus
35	chr15:76167200-76182400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:76167200-76184000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:76167200-76184800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:76167200-76193800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:76167200-76195200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:76167200-76195600	Weak transcription	Lung	lung
41	chr15:76167600-76195400	Weak transcription	Brain Angular Gyrus	brain
42	chr15:76168000-76183000	Weak transcription	NHEK	skin
43	chr15:76168000-76185800	Weak transcription	Fetal Lung	lung
44	chr15:76168200-76195000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:76168800-76183000	Weak transcription	Fetal Brain Female	brain
46	chr15:76169400-76183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:76172000-76184000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr15:76172000-76195200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:76172200-76182400	Weak transcription	Adipose Nuclei	Adipose
50	chr15:76172200-76184000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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