Variant report

Variant	rs337141
Chromosome Location	chr1:220933454-220933455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220932351..220934813-chr1:220937381..220940360,2	K562	blood:
2	chr1:220932972..220935057-chr1:220960206..220962159,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs11118602	1.00[EUR][1000 genomes]
rs11118603	1.00[EUR][1000 genomes]
rs1113125	1.00[EUR][1000 genomes]
rs11557506	1.00[EUR][1000 genomes]
rs12021979	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12023202	1.00[EUR][1000 genomes]
rs12023249	1.00[EUR][1000 genomes]
rs12023303	1.00[EUR][1000 genomes]
rs12023484	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12024252	1.00[EUR][1000 genomes]
rs12026176	1.00[EUR][1000 genomes]
rs12026612	1.00[EUR][1000 genomes]
rs12026813	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12027068	1.00[EUR][1000 genomes]
rs12027298	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12027302	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12027337	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12028887	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12030190	1.00[EUR][1000 genomes]
rs12030249	1.00[EUR][1000 genomes]
rs12030434	1.00[EUR][1000 genomes]
rs12030456	1.00[EUR][1000 genomes]
rs12031479	1.00[EUR][1000 genomes]
rs12031951	1.00[EUR][1000 genomes]
rs12032336	1.00[EUR][1000 genomes]
rs12033644	1.00[EUR][1000 genomes]
rs12033645	1.00[EUR][1000 genomes]
rs12033732	1.00[EUR][1000 genomes]
rs12033808	1.00[EUR][1000 genomes]
rs12034685	1.00[EUR][1000 genomes]
rs12034691	1.00[EUR][1000 genomes]
rs12038621	0.82[ASN][1000 genomes]
rs12039436	1.00[EUR][1000 genomes]
rs12041919	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12041923	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12041952	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12041956	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12043169	0.93[ASN][1000 genomes]
rs12043238	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12044903	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12045050	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12046425	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12046511	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12046515	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12047809	1.00[EUR][1000 genomes]
rs12047899	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12048193	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12048740	1.00[EUR][1000 genomes]
rs12048861	1.00[EUR][1000 genomes]
rs12049111	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1389745	1.00[EUR][1000 genomes]
rs1389746	1.00[EUR][1000 genomes]
rs1389747	1.00[EUR][1000 genomes]
rs17008639	1.00[EUR][1000 genomes]
rs17008644	1.00[EUR][1000 genomes]
rs17008646	1.00[EUR][1000 genomes]
rs17008649	0.83[EUR][1000 genomes]
rs17008667	1.00[EUR][1000 genomes]
rs17008670	1.00[EUR][1000 genomes]
rs17008680	1.00[EUR][1000 genomes]
rs182872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1982894	1.00[EUR][1000 genomes]
rs1982895	1.00[EUR][1000 genomes]
rs2067632	1.00[EUR][1000 genomes]
rs2067633	1.00[EUR][1000 genomes]
rs2275574	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs337137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371348	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767324	1.00[EUR][1000 genomes]
rs3795535	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3820349	0.89[ASN][1000 genomes]
rs3820350	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3820352	0.89[ASN][1000 genomes]
rs3820353	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3902885	1.00[EUR][1000 genomes]
rs4124596	1.00[EUR][1000 genomes]
rs419746	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4480363	1.00[EUR][1000 genomes]
rs449699	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs453079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58538649	0.89[ASN][1000 genomes]
rs60183673	0.86[ASN][1000 genomes]
rs67065803	1.00[EUR][1000 genomes]
rs67889619	1.00[EUR][1000 genomes]
rs72472377	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72472379	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472380	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472383	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472384	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472389	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472390	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472391	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472392	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472394	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72472398	1.00[EUR][1000 genomes]
rs72473905	1.00[EUR][1000 genomes]
rs72473913	1.00[EUR][1000 genomes]
rs746767	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523389	chr1:220926844-220956012	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220922600-220943800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:220922600-220946400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:220922800-220959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:220922800-220959600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:220923200-220948000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:220924200-220936000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:220924600-220936800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:220924600-220944000	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:220924800-220945600	Weak transcription	Osteobl	bone
10	chr1:220925000-220946000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:220925000-220959400	Weak transcription	Brain Angular Gyrus	brain
12	chr1:220925200-220942000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:220925200-220943400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:220925400-220950200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:220925800-220938400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:220927600-220934400	Weak transcription	Stomach Mucosa	stomach
17	chr1:220927800-220938600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:220928000-220933600	Strong transcription	Fetal Stomach	stomach
19	chr1:220929400-220940600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr1:220929600-220934600	Weak transcription	HepG2	liver
21	chr1:220929600-220935800	Weak transcription	Esophagus	oesophagus
22	chr1:220929600-220943000	Weak transcription	Brain Germinal Matrix	brain
23	chr1:220929800-220940800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:220930000-220934600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:220930000-220940600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:220930000-220942400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:220930000-220943400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:220930000-220946000	Weak transcription	Fetal Brain Female	brain
29	chr1:220930000-220950000	Weak transcription	Fetal Brain Male	brain
30	chr1:220930000-220950200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:220930000-220950400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:220930000-220959600	Weak transcription	Psoas Muscle	Psoas
33	chr1:220930200-220935200	Weak transcription	Placenta	Placenta
34	chr1:220930200-220935800	Weak transcription	Colonic Mucosa	Colon
35	chr1:220930200-220936200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr1:220930200-220937800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:220930200-220940800	Weak transcription	NHLF	lung
38	chr1:220930200-220944000	Weak transcription	Colon Smooth Muscle	Colon
39	chr1:220930200-220950000	Weak transcription	Brain Anterior Caudate	brain
40	chr1:220930400-220934600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:220930400-220950000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:220930400-220959600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr1:220930600-220950000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:220930800-220935200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:220930800-220946000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:220931000-220934600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr1:220931000-220934600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr1:220931000-220935800	Weak transcription	Spleen	Spleen
49	chr1:220931000-220946200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:220931200-220934400	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links