Variant report

Variant	rs337183
Chromosome Location	chr1:220905459-220905460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11118593	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs337158	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs337160	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs337161	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs337169	0.82[EUR][1000 genomes]
rs337170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs337172	0.88[EUR][1000 genomes]
rs337173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs337176	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs337181	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs337184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs774134	0.83[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs337183	C1orf115	cis	Nerve Tibial	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220903600-220907000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:220904400-220906000	Weak transcription	Small Intestine	intestine
3	chr1:220904600-220905800	Enhancers	Adipose Nuclei	Adipose
4	chr1:220904800-220905800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:220904800-220905800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:220905000-220905600	Enhancers	HUVEC	blood vessel
7	chr1:220905400-220905800	Enhancers	Liver	Liver
8	chr1:220905400-220906400	Enhancers	Spleen	Spleen
9	chr1:220905400-220906600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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